RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA526367" and tax_phylum = "Candidatus Saccharimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA526367 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6217420 6217420 PRJNA526367_P_NODE_51265_length_166_cov_3.521368_g51055_i0 PRJNA526367 51265 166 3.521368 5.84547088 Candidatus Nanosynbacter 2093823 Bacteria Bacteria 283 4.53e-72   NTclustered gi|734569044|gb|CP007496.1| 2093824 g51055 i0 98.742 1.91566265060241 159 2 96 0 8 166 691087 690929 Candidatus Nanosynbacter lyticus strain TM7x chromosome, complete genome blastn 318 283 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter lyticus
8766395 8766395 PRJNA526367_P_NODE_13847_length_324_cov_3.036364_g13638_i0 PRJNA526367 13847 324 3.036364 9.83781936 Candidatus Saccharimonadia 2093818 Bacteria Bacteria 185 2.88e-42   NTclustered gi|1842055115|gb|CP040000.1| 713059 g13638 i0 100 51.9413580246914 100 0 60 0 225 324 148162 148261 Candidatus Saccharibacteria bacterium oral taxon 488 strain FS03P chromosome, complete genome blastn 16829 185 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium oral taxon 488
23448727 23448727 PRJNA526367_P_NODE_62619_length_154_cov_9.085714_g62409_i0 PRJNA526367 62619 154 9.085714 13.99199956 Candidatus Saccharibacteria bacterium TM7i 2980174 Bacteria Bacteria 143 7.289999999999999e-30   NTclustered gi|2306681518|gb|CP075337.1| 2980174 g62409 i0 84.564 0.967532467532468 149 18 96 3 4 151 368841 368697 Candidatus Saccharibacteria bacterium TM7i chromosome, complete genome blastn 149 143 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium TM7i

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;