contig_metadata
9 rows where analysis = "blastn", bioproject = "PRJNA526367" and tax_phylum = "Campylobacterota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4323258 | 4323258 | PRJNA526367_P_NODE_64464_length_152_cov_7.106796_g64254_i0 | PRJNA526367 | 64464 | 152 | 7.106796 | 10.80232992 | Campylobacter ureolyticus | 827 | Bacteria | Bacteria | 241 | 2.47e-59 | NTclustered | gi|1829985141|gb|CP050963.1| | 827 | g64254 | i0 | 96.552 | 2.88157894736842 | 145 | 5 | 95 | 0 | 8 | 152 | 568752 | 568896 | Campylobacter ureolyticus strain FDAARGOS_673 chromosome | blastn | 438 | 241 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter ureolyticus | ||
| 7491869 | 7491869 | PRJNA526367_P_NODE_40886_length_181_cov_5.689394_g40676_i0 | PRJNA526367 | 40886 | 181 | 5.689394 | 10.29780314 | Campylobacter | 194 | Bacteria | Bacteria | 316 | 4.939999999999999e-82 | NTclustered | gi|1483583505|emb|LT631429.1| | 204 | g40676 | i0 | 100 | 267.613259668508 | 171 | 0 | 94 | 0 | 8 | 178 | 28389 | 28559 | Campylobacter showae genome assembly, plasmid: V | blastn | 48438 | 316 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter showae | ||
| 8766709 | 8766709 | PRJNA526367_P_NODE_37127_length_188_cov_2.935252_g36917_i0 | PRJNA526367 | 37127 | 188 | 2.935252 | 5.51827376 | root | 1 | Root_unresolved | Root_unresolved | 329 | 6.65e-86 | NTclustered | gi|2323232558|gb|CP109813.1| | 195 | g36917 | i0 | 100 | 99.3617021276596 | 178 | 0 | 95 | 0 | 4 | 181 | 568503 | 568326 | Campylobacter coli strain CC20JX12 chromosome, complete genome | blastn | 18680 | 329 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter coli | ||
| 11316714 | 11316714 | PRJNA526367_P_NODE_26749_length_324_cov_1.847273_g26540_i0 | PRJNA526367 | 26749 | 324 | 1.847273 | 5.98516452 | Campylobacter | 194 | Bacteria | Bacteria | 161 | 4.849999999999998e-35 | NTclustered | gi|1483583504|emb|LT631428.1| | 204 | g26540 | i0 | 97.849 | 3.07407407407407 | 93 | 2 | 59 | 0 | 8 | 100 | 26277 | 26369 | Campylobacter showae genome assembly, plasmid: IV | blastn | 996 | 161 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter showae | ||
| 11974861 | 11974861 | PRJNA526367_P_NODE_4890_length_332_cov_3.272085_g4681_i0 | PRJNA526367 | 4890 | 332 | 3.272085 | 10.8633222 | Campylobacter ureolyticus | 827 | Bacteria | Bacteria | 239 | 2.24e-58 | NTclustered | gi|1966876394|gb|CP068487.1| | 827 | g4681 | i0 | 99.242 | 2.74698795180723 | 132 | 1 | 69 | 0 | 194 | 325 | 476882 | 477013 | Campylobacter ureolyticus strain FDAARGOS_1102 chromosome | blastn | 912 | 239 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter ureolyticus | ||
| 12592378 | 12592378 | PRJNA526367_P_NODE_16570_length_324_cov_2.738182_g16361_i0 | PRJNA526367 | 16570 | 324 | 2.738182 | 8.87170968 | Campylobacter | 194 | Bacteria | Bacteria | 183 | 1.03e-41 | NTclustered | gi|1483583501|emb|LT631425.1| | 204 | g16361 | i0 | 100 | 29.3734567901235 | 99 | 0 | 59 | 0 | 225 | 323 | 72844 | 72746 | Campylobacter showae genome assembly, plasmid: I | blastn | 9517 | 183 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter showae | ||
| 17691302 | 17691302 | PRJNA526367_P_NODE_15774_length_324_cov_2.825455_g15565_i0 | PRJNA526367 | 15774 | 324 | 2.825455 | 9.1544742 | Campylobacter | 194 | Bacteria | Bacteria | 180 | 1.34e-40 | NTclustered | gi|2093921460|gb|CP082871.1| | 76517 | g15565 | i0 | 100 | 2.73456790123457 | 97 | 0 | 59 | 0 | 4 | 100 | 79456 | 79360 | Campylobacter hominis strain FDAARGOS_1467 chromosome, complete genome | blastn | 886 | 180 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter hominis | ||
| 22172806 | 22172806 | PRJNA526367_P_NODE_4258_length_344_cov_2.210169_g4050_i0 | PRJNA526367 | 4258 | 344 | 2.210169 | 7.60298136 | Campylobacter fetus | 196 | Bacteria | Bacteria | 172 | 2.39e-38 | NTclustered | gi|1043914323|gb|CP014570.1| | 32020 | g4050 | i0 | 98.969 | 0.552325581395349 | 97 | 0 | 55 | 1 | 4 | 100 | 20973 | 21068 | Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp2, complete sequence | blastn | 190 | 172 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter fetus | ||
| 22790866 | 22790866 | PRJNA526367_P_NODE_3878_length_348_cov_4.588629_g3670_i0 | PRJNA526367 | 3878 | 348 | 4.588629 | 15.96842892 | Campylobacter | 194 | Bacteria | Bacteria | 274 | 6.46e-69 | NTclustered | gi|2093923041|gb|CP082872.1| | 76517 | g3670 | i0 | 100 | 1.6551724137931 | 148 | 0 | 83 | 0 | 198 | 345 | 1771 | 1918 | Campylobacter hominis strain FDAARGOS_1467 plasmid unnamed1, complete sequence | blastn | 576 | 274 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter hominis |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;