RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA526367" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA526367 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15798543 15798543 PRJNA526367_P_NODE_29813_length_324_cov_1.516364_g29604_i0 PRJNA526367 29813 324 1.516364 4.91301936 Armatimonadetes bacterium Uphvl-Ar2 2004468 Bacteria Bacteria 139 2.27e-28   NTclustered gi|1199101103|gb|CP021424.1| 2004468 g29604 i0 93.617 66.4907407407407 94 4 29 2 225 317 2201781 2201689 Armatimonadetes bacterium Uphvl-Ar2 genome blastn 21543 139 1 Bacteria   Bacillati Armatimonadota         Armatimonadetes bacterium Uphvl-Ar2
20898082 20898082 PRJNA526367_P_NODE_35077_length_197_cov_2.567568_g34867_i0 PRJNA526367 35077 197 2.567568 5.05810896 Fimbriimonas sp. 1936159 Bacteria Bacteria 257 3.3700000000000004e-64   NTclustered gi|2778022393|emb|OZ123194.1| 1936159 g34867 i0 90.306 84.51269035533 196 19 99 0 2 197 1687578 1687773 MAG: Fimbriimonas sp. isolate MsE-30jul19-LR-01 genome assembly, chromosome: 1 blastn 16649 257 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;