RNAquarium Metadata Server
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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA526367" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 14 ✖

bioproject 1

  • PRJNA526367 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1113946 1113946 PRJNA526367_P_NODE_6161_length_324_cov_9.338182_g5952_i0 PRJNA526367 6161 324 9.338182 30.25570968 Fusobacterium 848 Bacteria Bacteria 154 8.110000000000001e-33   NTclustered gi|2705001187|gb|CP084066.1| 859 g5952 i0 94.898 1.81481481481481 98 5 30 0 3 100 458918 459015 Fusobacterium necrophorum strain SB057 chromosome, complete genome blastn 588 154 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
2389190 2389190 PRJNA526367_P_NODE_33122_length_231_cov_5.598901_g32912_i0 PRJNA526367 33122 231 5.598901 12.93346131 Fusobacterium 848 Bacteria Bacteria 409 1.0600000000000001e-109   NTclustered gi|2444100754|gb|CP117525.1| 851 g32912 i0 99.554 480.090909090909 224 1 97 0 4 227 177242 177019 Fusobacterium nucleatum strain FNV chromosome, complete genome blastn 110901 409 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
6873687 6873687 PRJNA526367_P_NODE_36626_length_189_cov_3.071429_g36416_i0 PRJNA526367 36626 189 3.071429 5.80500081 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 331 1.86e-86   NTclustered gi|922689899|gb|CP012410.1| 712357 g36416 i0 100 88.5767195767196 179 0 95 0 4 182 51787 51609 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 16741 331 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
8149186 8149186 PRJNA526367_P_NODE_50227_length_167_cov_1.728814_g50017_i0 PRJNA526367 50227 167 1.728814 2.88711938 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 298 1.63e-76   NTclustered gi|1276709865|gb|CP024700.1| 2663009 g50017 i0 98.802 99.9101796407186 167 2 100 0 1 167 1497969 1497803 Fusobacterium pseudoperiodonticum strain KCOM 1263 chromosome, complete genome blastn 16685 298 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
8766731 8766731 PRJNA526367_P_NODE_3847_length_349_cov_3.866667_g3639_i0 PRJNA526367 3847 349 3.866667 13.49466783 Fusobacterium 848 Bacteria Bacteria 130 1.48e-25   NTclustered gi|2573686249|gb|CP133474.1| 851 g3639 i0 88.073 13.0143266475645 109 13 31 0 187 295 694077 694185 Fusobacterium nucleatum strain LMG 13131 chromosome, complete genome blastn 4542 130 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
8766768 8766768 PRJNA526367_P_NODE_41267_length_180_cov_9.885496_g41057_i0 PRJNA526367 41267 180 9.885496 17.7938928 Cetobacterium 180162 Bacteria Bacteria 305 1.06e-78   NTclustered gi|2865368125|gb|CP122294.1| 188913 g41057 i0 98.276 57.6833333333333 174 3 97 0 1 174 279510 279337 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 10383 305 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
12592472 12592472 PRJNA526367_P_NODE_23850_length_324_cov_2.112727_g23641_i0 PRJNA526367 23850 324 2.112727 6.84523548 Fusobacterium 848 Bacteria Bacteria 185 2.88e-42   NTclustered gi|1973946753|gb|MW570846.1| 76859 g23641 i0 100 54.3888888888889 100 0 62 0 1 100 607 706 Fusobacterium animalis strain KCOM 3685 (= JS549) 16S ribosomal RNA gene, partial sequence blastn 17622 185 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis
12592557 12592557 PRJNA526367_P_NODE_29630_length_324_cov_1.570909_g29421_i0 PRJNA526367 29630 324 1.5709090000000001 5.08974516 Leptotrichia 32067 Bacteria Bacteria 183 1.03e-41   NTclustered gi|470484715|ref|NR_076664.1| 40542 g29421 i0 100 96.9537037037037 99 0 61 0 1 99 932 1030 Leptotrichia buccalis strain C-1013-b 23S ribosomal RNA gene, complete sequence blastn 31413 183 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
12592818 12592818 PRJNA526367_P_NODE_46550_length_172_cov_3.634146_g46340_i0 PRJNA526367 46550 172 3.634146 6.25073112 Fusobacterium 848 Bacteria Bacteria 298 1.68e-76   NTclustered gi|2573686249|gb|CP133474.1| 851 g46340 i0 100 451.063953488372 161 0 94 0 9 169 322081 322241 Fusobacterium nucleatum strain LMG 13131 chromosome, complete genome blastn 77583 298 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
18347771 18347771 PRJNA526367_P_NODE_55375_length_163_cov_0.894737_g55165_i0 PRJNA526367 55375 163 0.894737 1.45842131 Leptotrichia wadei 157687 Bacteria Bacteria 296 5.68e-76   NTclustered gi|1708575239|dbj|AP019834.1| 157687 g55165 i0 99.387 11.9079754601227 163 1 100 0 1 163 625833 625995 Leptotrichia wadei JMUB3933 DNA, complete genome blastn 1941 296 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
18965712 18965712 PRJNA526367_P_NODE_9175_length_324_cov_3.800000_g8966_i0 PRJNA526367 9175 324 3.8 12.312 Bacteria 2 Bacteria Bacteria 172 2.2399999999999998e-38   NTclustered gi|2705001187|gb|CP084066.1| 859 g8966 i0 100 1.43518518518519 93 0 29 0 225 317 454667 454759 Fusobacterium necrophorum strain SB057 chromosome, complete genome blastn 465 172 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
19622386 19622386 PRJNA526367_P_NODE_65436_length_151_cov_5.892157_g65226_i0 PRJNA526367 65436 151 5.892157 8.89715707 Leptotrichia wadei 157687 Bacteria Bacteria 268 1.12e-67   NTclustered gi|1708572596|dbj|AP019830.1| 157687 g65226 i0 100 0.960264900662252 145 0 96 0 7 151 22105 22249 Leptotrichia wadei JCM16777 plasmid pJCM16777-1 DNA, complete genome blastn 145 268 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
20240226 20240226 PRJNA526367_P_NODE_38596_length_185_cov_5.551471_g38386_i0 PRJNA526367 38596 185 5.551471 10.27022135 Fusobacterium 848 Bacteria Bacteria 322 1.09e-83   NTclustered gi|2078816781|gb|CP071094.1| 76857 g38386 i0 99.435 408.454054054054 177 1 96 0 3 179 465023 465199 Fusobacterium polymorphum strain THCT15E1 chromosome, complete genome blastn 75564 322 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
23448196 23448196 PRJNA526367_P_NODE_24039_length_324_cov_2.094545_g23830_i0 PRJNA526367 24039 324 2.094545 6.7863258 Sneathia sanguinegens 40543 Bacteria Bacteria 180 1.34e-40   NTclustered gi|2769805188|gb|CP160095.1| 40543 g23830 i0 100 132.253086419753 97 0 59 0 225 321 3141 3237 Sneathia sanguinegens strain CCUG 41628T chromosome, complete genome blastn 42850 180 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia Sneathia sanguinegens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;