RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA520845" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA520845 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
489812 489812 PRJNA520845_P_NODE_200661_length_261_cov_1.361702_g199162_i0 PRJNA520845 200661 261 1.361702 3.55404222 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 350 7.539999999999999e-92   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g199162 i0 90.805 15.8812260536398 261 24 100 0 1 261 3253576 3253316 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 4145 350 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
1765445 1765445 PRJNA520845_P_NODE_214042_length_251_cov_0.865169_g212543_i0 PRJNA520845 214042 251 0.865169 2.17157419 Akkermansia muciniphila 239935 Bacteria Bacteria 464 2.47e-126   NTclustered gi|1888387165|gb|CP058562.1| 239935 g212543 i0 100 16.1115537848606 251 0 100 0 1 251 1836756 1836506 Akkermansia muciniphila strain AK32 chromosome, complete genome blastn 4044 464 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
3040414 3040414 PRJNA520845_P_NODE_183203_length_275_cov_1.524752_g181704_i0 PRJNA520845 183203 275 1.524752 4.193068 Verrucomicrobium sp. GAS474 1882831 Bacteria Bacteria 76.8 1.5e-9   NTclustered gi|1085974270|emb|LT629781.1| 1882831 g181704 i0 91.071 0.549090909090909 56 5 21 0 130 185 869768 869713 Verrucomicrobiaceae bacterium GAS474 genome assembly, chromosome: I blastn 151 76.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium sp. GAS474
11969765 11969765 PRJNA520845_P_NODE_243110_length_245_cov_2.412791_g241611_i0 PRJNA520845 243110 245 2.412791 5.91133795 Akkermansia muciniphila 239935 Bacteria Bacteria 453 5.1900000000000006e-123   NTclustered gi|2756360508|gb|CP156688.1| 239935 g241611 i0 100 100 245 0 100 0 1 245 2505602 2505846 Akkermansia muciniphila strain AKK-TMU chromosome, complete genome blastn 24500 453 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;