RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA520845" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA520845 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1764494 1764494 PRJNA520845_P_NODE_177202_length_280_cov_1.207729_g175703_i0 PRJNA520845 177202 280 1.207729 3.3816412 Geomonas subterranea 2847989 Bacteria Bacteria 52.8 0.026   NTclustered gi|2060227305|gb|CP077683.1| 2847989 g175703 i0 100 0.210714285714286 28 0 10 0 21 48 932247 932220 Geomonas subterranea strain RG2 chromosome, complete genome blastn 59 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas subterranea
5593975 5593975 PRJNA520845_P_NODE_211225_length_252_cov_2.022346_g209726_i0 PRJNA520845 211225 252 2.022346 5.09631192 Desulfovibrio sp. 86 2666132 Bacteria Bacteria 466 6.89e-127   NTclustered gi|1862956133|emb|LR738849.1| 2666132 g209726 i0 100 103 252 0 100 0 1 252 3245259 3245510 Desulfovibrio sp. 86 genome assembly, chromosome: DESU86 blastn 25956 466 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. 86
14519241 14519241 PRJNA520845_P_NODE_216792_length_251_cov_0.865169_g215293_i0 PRJNA520845 216792 251 0.865169 2.17157419 Trichlorobacter lovleyi 313985 Bacteria Bacteria 58.4 4.89e-4   NTclustered gi|189419341|gb|CP001089.1| 398767 g215293 i0 100 0.239043824701195 31 0 12 0 201 231 2095406 2095436 Geobacter lovleyi SZ, complete genome blastn 60 58.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Trichlorobacter Trichlorobacter lovleyi
15793906 15793906 PRJNA520845_P_NODE_252293_length_244_cov_0.900585_g250794_i0 PRJNA520845 252293 244 0.900585 2.1974274 Pseudodesulfovibrio mercurii 641491 Bacteria Bacteria 52.8 0.022   NTclustered gi|365906293|gb|CP003220.1| 641491 g250794 i0 100 0.114754098360656 28 0 11 0 131 158 1010159 1010186 Pseudodesulfovibrio mercurii strain ND132 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio mercurii
18963398 18963398 PRJNA520845_P_NODE_260755_length_242_cov_0.911243_g259256_i0 PRJNA520845 260755 242 0.911243 2.20520806 Desulfosudis 2904716 Bacteria Bacteria 252 2e-62   NTclustered gi|158508843|gb|CP000859.1| 96561 g259256 i0 85.714 201.285123966942 245 28 100 6 1 242 684011 683771 Desulfococcus oleovorans Hxd3, complete genome blastn 48711 252 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosudaceae Desulfosudis Desulfosudis oleivorans
19616251 19616251 PRJNA520845_P_NODE_212896_length_251_cov_1.370787_g211397_i0 PRJNA520845 212896 251 1.370787 3.44067537 Desulfuromonas versatilis 2802975 Bacteria Bacteria 52.8 0.023   NTclustered gi|2065532709|dbj|AP024355.1| 2802975 g211397 i0 100 0.111553784860558 28 0 11 0 62 89 390868 390841 Desulfuromonas versatilis NIT-T3 DNA, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas versatilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;