RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA520845" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA520845 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5594461 5594461 PRJNA520845_P_NODE_229305_length_248_cov_0.880000_g227806_i0 PRJNA520845 229305 248 0.88 2.1824 Anatilimnocola aggregata 2528021 Bacteria Bacteria 204 5.849999999999999e-48   NTclustered gi|1712591889|gb|CP036274.1| 2528021 g227806 i0 82.353 66.25 238 38 95 4 11 246 7379421 7379186 Anatilimnocola aggregata strain ETA_A8 chromosome, complete genome blastn 16430 204 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Anatilimnocola Anatilimnocola aggregata
10697230 10697230 PRJNA520845_P_NODE_93409_length_384_cov_1.771704_g91910_i0 PRJNA520845 93409 384 1.771704 6.80334336 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 311 5.48e-80   NTclustered gi|2076441902|gb|CP075368.1| 2026777 g91910 i0 82.486 16.453125 354 62 92 0 31 384 1894050 1894403 MAG: Phycisphaeraceae bacterium isolate ACE_PLA2 chromosome blastn 6318 311 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
23442957 23442957 PRJNA520845_P_NODE_225919_length_249_cov_0.875000_g224420_i0 PRJNA520845 225919 249 0.875 2.17875 Anatilimnocola aggregata 2528021 Bacteria Bacteria 255 1.6e-63   NTclustered gi|1712591889|gb|CP036274.1| 2528021 g224420 i0 86.192 96.5341365461847 239 29 95 4 1 237 7630767 7631003 Anatilimnocola aggregata strain ETA_A8 chromosome, complete genome blastn 24037 255 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Anatilimnocola Anatilimnocola aggregata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;