RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA520845" and tax_phylum = "Hemichordata"

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tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA520845 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3043627 3043627 PRJNA520845_P_NODE_65523_length_459_cov_5.266839_g64024_i0 PRJNA520845 65523 459 5.266839 24.17479101 Ptychodera flava 63121 Hemichordata other_Eukaryota 267 1.46e-66   NTclustered gi|2875711234|ref|XM_070686233.1| 63121 g64024 i0 89.904 43.4945533769063 208 19 45 2 1 207 1289 1495 PREDICTED: Ptychodera flava tubulin alpha-1A chain-like (LOC139121399), mRNA blastn 19964 267 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
4940216 4940216 PRJNA520845_P_NODE_60584_length_479_cov_1.199507_g59088_i0 PRJNA520845 60584 479 1.199507 5.74563853 Metazoa 33208 Hemichordata other_Eukaryota 326 2.49e-84   NTclustered gi|2875693509|ref|XM_070680034.1| 63121 g59088 i0 78.992 89.705636743215 476 100 99 0 2 477 711 236 PREDICTED: Ptychodera flava tubulin beta chain-like (LOC139117161), mRNA blastn 42969 326 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
8145707 8145707 PRJNA520845_P_NODE_67447_length_453_cov_1.278947_g65948_i0 PRJNA520845 67447 453 1.278947 5.79362991 Ptychodera flava 63121 Hemichordata other_Eukaryota 366 1.3799999999999995e-96   NTclustered gi|2875693509|ref|XM_070680034.1| 63121 g65948 i0 81.716 95.9602649006623 443 78 97 3 6 446 947 506 PREDICTED: Ptychodera flava tubulin beta chain-like (LOC139117161), mRNA blastn 43470 366 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
14521827 14521827 PRJNA520845_P_NODE_77552_length_422_cov_0.882521_g76053_i0 PRJNA520845 77552 422 0.882521 3.72423862 Ptychodera flava 63121 Hemichordata other_Eukaryota 54.7 0.011   NTclustered gi|2875662737|ref|XM_070716283.1| 63121 g76053 i0 96.97 0.0781990521327014 33 0 8 1 240 271 1315 1283 PREDICTED: Ptychodera flava T-box transcription factor TBX20-like (LOC139145251), mRNA blastn 33 54.7 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
17069836 17069836 PRJNA520845_P_NODE_65014_length_461_cov_2.822165_g63515_i0 PRJNA520845 65014 461 2.822165 13.01018065 Ptychodera flava 63121 Hemichordata other_Eukaryota 169 4.26e-37   NTclustered gi|2875658907|ref|XM_070714316.1| 63121 g63515 i0 80.734 1.96529284164859 218 40 47 2 239 455 140 356 PREDICTED: Ptychodera flava histone H2B, gonadal-like (LOC139143767), mRNA blastn 906 169 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;