RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA520845" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA520845 · 14 ✖

analysis 1

  • blastn · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1766657 1766657 PRJNA520845_P_NODE_26042_length_753_cov_1.405882_g24651_i0 PRJNA520845 26042 753 1.405882 10.58629146 Rhizophydium sp. 2012224 Fungi Fungi 459 3.81e-124   NTclustered gi|1866582435|gb|MT730610.1| 2012224 g24651 i0 81.549 77.8791500664011 607 67 80 26 154 752 4496 3927 Rhizophydium sp. isolate ARG035 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 58643 459 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Rhizophydiaceae Rhizophydium Rhizophydium sp.
3040004 3040004 PRJNA520845_P_NODE_167383_length_288_cov_1.074419_g165884_i0 PRJNA520845 167383 288 1.074419 3.09432672 Polychytrium aggregatum 110093 Fungi Fungi 110 1.56e-19   NTclustered gi|2432149348|ref|XM_053111166.1| 110093 g165884 i0 88.764 1.22916666666667 89 10 31 0 177 265 198 286 Polychytrium aggregatum ribosomal protein S19-domain-containing protein (BJ171DRAFT_506928), mRNA blastn 354 110 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
5592466 5592466 PRJNA520845_P_NODE_15625_length_984_cov_5.782656_g14483_i0 PRJNA520845 15625 984 5.782656 56.90133504 Polychytrium aggregatum 110093 Fungi Fungi 484 8.29e-132   NTclustered gi|2432156890|ref|XM_053107738.1| 110093 g14483 i0 78.784 40.724593495935 740 143 74 12 214 946 733 1 Polychytrium aggregatum 60S ribosomal protein L2 (BJ171DRAFT_425809), partial mRNA blastn 40073 484 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
5597249 5597249 PRJNA520845_P_NODE_96845_length_377_cov_3.312500_g95346_i0 PRJNA520845 96845 377 3.3125 12.488125 Fimicolochytrium jonesii 1396493 Fungi Fungi 185 3.389999999999999e-42   NTclustered gi|2432094951|ref|XM_053073522.1| 1396493 g95346 i0 81.197 50.4244031830239 234 40 62 4 143 374 483 252 Fimicolochytrium jonesii ribosomal protein L19e (EV422DRAFT_590272), mRNA blastn 19010 185 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
8764449 8764449 PRJNA520845_P_NODE_188147_length_271_cov_1.555556_g186648_i0 PRJNA520845 188147 271 1.555556 4.21555676 Batrachochytrium 100474 Fungi Fungi 252 2.2799999999999998e-62   NTclustered gi|2897839259|gb|CP161931.1| 109871 g186648 i0 85.477 92.5166051660517 241 35 89 0 2 242 994895 994655 Batrachochytrium dendrobatidis strain JEL423 chromosome 9 blastn 25072 252 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
10693143 10693143 PRJNA520845_P_NODE_179949_length_278_cov_1.126829_g178450_i0 PRJNA520845 179949 278 1.126829 3.13258462 Polychytrium aggregatum 110093 Fungi Fungi 58.4 5.5e-4   NTclustered gi|2432133405|ref|XM_053106596.1| 110093 g178450 i0 100 5.86330935251799 31 0 11 0 48 78 33 63 Polychytrium aggregatum pseudouridine synthase (BJ171DRAFT_237634), mRNA blastn 1630 58.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
10694926 10694926 PRJNA520845_P_NODE_246029_length_245_cov_0.895349_g244530_i0 PRJNA520845 246029 245 0.895349 2.19360505 Spizellomyces punctatus 109760 Fungi Fungi 267 7.249999999999999e-67   NTclustered gi|1027002790|ref|XM_016754434.1| 645134 g244530 i0 86.42 218.657142857143 243 33 99 0 1 243 636 394 Spizellomyces punctatus DAOM BR117 polyubiquitin (SPPG_06227), mRNA blastn 53571 267 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
14517295 14517295 PRJNA520845_P_NODE_144472_length_311_cov_0.970588_g142973_i0 PRJNA520845 144472 311 0.970588 3.01852868 Polychytrium aggregatum 110093 Fungi Fungi 265 3.4299999999999996e-66   NTclustered gi|2432131643|ref|XM_053113105.1| 110093 g142973 i0 82.566 95.6784565916399 304 49 97 4 4 305 262 563 Polychytrium aggregatum 40S ribosomal protein S2 (BJ171DRAFT_557656), partial mRNA blastn 29756 265 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
16414244 16414244 PRJNA520845_P_NODE_200273_length_261_cov_1.638298_g198774_i0 PRJNA520845 200273 261 1.638298 4.27595778 Opisthokonta 33154 Fungi Fungi 219 2.22e-52   NTclustered gi|387233032|gb|JN033824.1| 4757 g198774 i0 83.128 65.5057471264368 243 37 92 4 1 241 667 427 Neocallimastix frontalis strain PMA02 glyceraldehyde-3-phosphate dehydrogenase (GAP1) mRNA, partial cds blastn 17097 219 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix frontalis
17069045 17069045 PRJNA520845_P_NODE_32654_length_665_cov_2.687500_g31205_i0 PRJNA520845 32654 665 2.6875 17.871875 Polychytrium aggregatum 110093 Fungi Fungi 200 2.24e-46   NTclustered gi|2432162630|ref|XM_053112000.1| 110093 g31205 i0 76.485 20.9368421052632 404 73 60 16 56 451 134 523 Polychytrium aggregatum ribosomal protein L22/L17 (BJ171DRAFT_515986), mRNA blastn 13923 200 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
20237794 20237794 PRJNA520845_P_NODE_162536_length_292_cov_1.054795_g161037_i0 PRJNA520845 162536 292 1.054795 3.0800014 Batrachochytrium 100474 Fungi Fungi 176 1.54e-39   NTclustered gi|413965569|gb|AC254096.1| 109871 g161037 i0 82.587 8.68835616438356 201 33 68 2 88 287 3204 3403 Batrachochytrium dendrobatidis clone JGIBIIY-21E11, complete sequence blastn 2537 176 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
20238190 20238190 PRJNA520845_P_NODE_251756_length_244_cov_0.900585_g250257_i0 PRJNA520845 251756 244 0.900585 2.1974274 Fungi 4751 Fungi Fungi 82.4 2.81e-11   NTclustered gi|1402550331|ref|NG_060250.1| 109889 g250257 i0 91.667 3.95901639344262 60 4 25 1 43 102 2548 2606 Lobulomyces angularis JEL 45 28S rRNA gene, partial sequence; from reference material blastn 966 82.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales Lobulomycetaceae Lobulomyces Lobulomyces angularis
20238221 20238221 PRJNA520845_P_NODE_258296_length_242_cov_1.822485_g256797_i0 PRJNA520845 258296 242 1.822485 4.4104137 Eukaryota 2759 Fungi Fungi 187 5.73e-43   NTclustered gi|2432131102|ref|XM_053109247.1| 110093 g256797 i0 84.865 43.297520661157 185 28 76 0 58 242 586 402 Polychytrium aggregatum putative ubiquitin/ribosomal protein S27a fusion protein (BJ171DRAFT_487026), mRNA blastn 10478 187 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
20891534 20891534 PRJNA520845_P_NODE_185297_length_273_cov_2.205000_g183798_i0 PRJNA520845 185297 273 2.205 6.01965 Polychytrium aggregatum 110093 Fungi Fungi 206 1.82e-48   NTclustered gi|2432131711|ref|XM_053109357.1| 110093 g183798 i0 84.018 69.3223443223443 219 30 80 4 56 273 125 339 Polychytrium aggregatum calmodulin (BJ171DRAFT_488251), mRNA blastn 18925 206 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;