RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA520845" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA520845 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3042429 3042429 PRJNA520845_P_NODE_259163_length_242_cov_1.171598_g257664_i0 PRJNA520845 259163 242 1.171598 2.83526716 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 52.8 0.022   NTclustered gi|2621702714|emb|OY759598.1| 2026734 g257664 i0 96.774 0.384297520661157 31 1 13 0 178 208 1713957 1713927 MAG: Dehalococcoidia bacterium isolate 9e3974e8-1b76-4a2a-ace1-a6b9f67a3735 genome assembly, chromosome: 1 blastn 93 52.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
10039981 10039981 PRJNA520845_P_NODE_185408_length_273_cov_1.925000_g183909_i0 PRJNA520845 185408 273 1.925 5.25525 Bacillati 1783272 Bacteria Bacteria 91.6 5.31e-14   NTclustered gi|2893358385|emb|OZ220679.1| 2026734 g183909 i0 86.585 21.5824175824176 82 11 30 0 12 93 362811 362730 MAG: Dehalococcoidia bacterium isolate bff0dcbd-e965-4f93-bb55-57b6ceb5617d genome assembly, chromosome: 1 blastn 5892 91.6 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
18343242 18343242 PRJNA520845_P_NODE_26595_length_744_cov_3.181818_g25197_i0 PRJNA520845 26595 744 3.181818 23.67272592 Chloroflexota bacterium 2026724 Bacteria Bacteria 54.7 0.021   NTclustered gi|1985684846|gb|CP069394.1| 2026724 g25197 i0 94.444 0.0483870967741935 36 0 5 2 296 329 736675 736640 Chloroflexi bacterium strain ZRK35 chromosome, complete genome blastn 36 54.7 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;