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contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA520845" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 18 ✖

bioproject 1

  • PRJNA520845 · 18 ✖

analysis 1

  • blastn · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5591822 5591822 PRJNA520845_P_NODE_133985_length_323_cov_0.928000_g132486_i0 PRJNA520845 133985 323 0.928 2.99744 Volvox carteri 3067 Plants Plants 54.7 0.008   NTclustered gi|302841786|ref|XM_002952392.1| 3068 g132486 i0 96.875 0.0990712074303406 32 1 10 0 12 43 3063 3094 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_93041), partial mRNA blastn 32 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
6865798 6865798 PRJNA520845_P_NODE_134506_length_322_cov_1.277108_g133007_i0 PRJNA520845 134506 322 1.277108 4.11228776 Monoraphidium neglectum 145388 Plants Plants 119 2.94e-22   NTclustered gi|926789080|ref|XM_014047560.1| 145388 g133007 i0 97.143 1.18944099378882 70 2 22 0 248 317 767 698 Monoraphidium neglectum elongation factor EF-2 mRNA blastn 383 119 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
6869253 6869253 PRJNA520845_P_NODE_262386_length_242_cov_0.911243_g260887_i0 PRJNA520845 262386 242 0.911243 2.20520806 Chlamydomonas sp. TK-1983 3056 Plants Plants 178 3.45e-40   NTclustered gi|174203|gb|K02345.1|CRERRA 3056 g260887 i0 94.737 0.471074380165289 114 6 47 0 127 240 118 5 Chlamydomonas sp. TK-1983 5S ribosomal RNA gene, complete sequence blastn 114 178 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. TK-1983
7489401 7489401 PRJNA520845_P_NODE_159766_length_295_cov_0.896396_g158267_i0 PRJNA520845 159766 295 0.896396 2.6443682 Eukaryota 2759 Plants Plants 54.7 0.008   NTclustered gi|2082248479|ref|XM_043063354.1| 3055 g158267 i0 100 3.53220338983051 29 0 10 0 146 174 2707 2679 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g286650v5), mRNA blastn 1042 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
9415300 9415300 PRJNA520845_P_NODE_101488_length_369_cov_1.560811_g99989_i0 PRJNA520845 101488 369 1.560811 5.75939259 Chlorella variabilis 554065 Plants Plants 196 1.53e-45   NTclustered gi|552845442|ref|XM_005851291.1| 554065 g99989 i0 79.71 68.2466124661247 276 53 75 3 1 275 274 1 Chlorella variabilis hypothetical protein (CHLNCDRAFT_137537) mRNA, complete cds blastn 25183 196 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
11969934 11969934 PRJNA520845_P_NODE_249030_length_244_cov_1.233918_g247531_i0 PRJNA520845 249030 244 1.233918 3.01075992 Dunaliella salina 3046 Plants Plants 233 7.319999999999999e-57   NTclustered gi|672094965|gb|KM008612.1| 3046 g247531 i0 84.016 9.31147540983607 244 37 99 2 1 243 1126 884 Dunaliella salina strain CCAP19/18 enolase mRNA, complete cds blastn 2272 233 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
13242816 13242816 PRJNA520845_P_NODE_164431_length_290_cov_1.364055_g162932_i0 PRJNA520845 164431 290 1.364055 3.9557595 Polytomella sp. Pringsheim 198.80 37502 Plants Plants 267 8.81e-67   NTclustered gi|27527738|emb|AJ416378.1| 37502 g162932 i0 86.235 21.8241379310345 247 32 85 2 44 289 38 283 Polytomella sp. 'Pringsheim 198.80' mRNA for mitochondrial cytochrome c (cyc gene) blastn 6329 267 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
15792134 15792134 PRJNA520845_P_NODE_18613_length_899_cov_8.444310_g17371_i0 PRJNA520845 18613 899 8.44431 75.9143469 Volvox carteri 3067 Plants Plants 259 4.98e-64   NTclustered gi|302840791|ref|XM_002951896.1| 3068 g17371 i0 77.986 3.0789766407119 427 84 47 7 455 876 452 31 Volvox carteri f. nagariensis component of cytosolic 80S ribosome and 60S large subunit (rpl19), mRNA blastn 2768 259 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
15792803 15792803 PRJNA520845_P_NODE_209753_length_254_cov_1.116022_g208254_i0 PRJNA520845 209753 254 1.116022 2.83469588 Chlamydomonas reinhardtii 3055 Plants Plants 226 1.2799999999999999e-54   NTclustered gi|2082268575|ref|XM_001695756.2| 3055 g208254 i0 84.348 8.3503937007874 230 36 91 0 25 254 131 360 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_16g672650v5), mRNA blastn 2121 226 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
17068402 17068402 PRJNA520845_P_NODE_249754_length_244_cov_0.900585_g248255_i0 PRJNA520845 249754 244 0.900585 2.1974274 Chlorella variabilis 554065 Plants Plants 274 4.31e-69   NTclustered gi|552821707|ref|XM_005845861.1| 554065 g248255 i0 87.19 3.96311475409836 242 29 99 2 4 244 822 582 Chlorella variabilis hypothetical protein (CHLNCDRAFT_53648) mRNA, complete cds blastn 967 274 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
18340147 18340147 PRJNA520845_P_NODE_150155_length_305_cov_0.995690_g148656_i0 PRJNA520845 150155 305 0.99569 3.0368545 Dunaliella salina 3046 Plants Plants 246 1.22e-60   NTclustered gi|2599103|gb|AF028833.1|AF028833 3046 g148656 i0 82.796 3.63934426229508 279 44 91 4 3 279 293 569 Dunaliella salina 60S ribosomal protein (DSRP1) mRNA, complete cds blastn 1110 246 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
18341377 18341377 PRJNA520845_P_NODE_195075_length_266_cov_1.196891_g193576_i0 PRJNA520845 195075 266 1.196891 3.18373006 Chlamydomonas reinhardtii 3055 Plants Plants 121 6.57e-23   NTclustered gi|2082247485|ref|XM_001696149.2| 3055 g193576 i0 83.206 6.73308270676692 131 22 49 0 29 159 261 391 Chlamydomonas reinhardtii ribosomal protein S8 (CHLRE_06g272800v5), mRNA blastn 1791 121 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
18341861 18341861 PRJNA520845_P_NODE_212935_length_251_cov_1.320225_g211436_i0 PRJNA520845 212935 251 1.320225 3.31376475 Auxenochlorella protothecoides 3075 Plants Plants 233 7.569999999999999e-57   NTclustered gi|760439386|ref|XM_011398460.1| 3075 g211436 i0 84.426 21.6135458167331 244 30 96 8 7 246 1242 1003 Auxenochlorella protothecoides Fumarate hydratase 2, chloroplastic partial mRNA blastn 5425 233 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
18344428 18344428 PRJNA520845_P_NODE_74155_length_431_cov_2.284916_g72656_i0 PRJNA520845 74155 431 2.284916 9.84798796 Chlamydomonas reinhardtii 3055 Plants Plants 52.8 0.042   NTclustered gi|1358957427|gb|AC276955.1| 3055 g72656 i0 100 0.129930394431555 28 0 6 0 295 322 10645 10672 Chlamydomonas reinhardtii clone VTP473-H09, complete sequence blastn 56 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
19613845 19613845 PRJNA520845_P_NODE_124636_length_334_cov_1.770115_g123137_i0 PRJNA520845 124636 334 1.770115 5.9121841 Chlamydomonas reinhardtii 3055 Plants Plants 63.9 1.45e-5   NTclustered gi|2082238366|ref|XM_043059241.1| 3055 g123137 i0 91.304 0.137724550898204 46 4 14 0 164 209 1556 1511 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g081250v5), mRNA blastn 46 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
22167460 22167460 PRJNA520845_P_NODE_231818_length_248_cov_0.880000_g230319_i0 PRJNA520845 231818 248 0.88 2.1824 Chlamydomonas reinhardtii 3055 Plants Plants 65.8 2.88e-6   NTclustered gi|2082255382|ref|XM_043066205.1| 3055 g230319 i0 86.667 13.3991935483871 60 7 24 1 32 91 2125 2067 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_09g407400v5), mRNA blastn 3323 65.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
22788170 22788170 PRJNA520845_P_NODE_111878_length_352_cov_1.193548_g110379_i0 PRJNA520845 111878 352 1.193548 4.20128896 Eukaryota 2759 Plants Plants 302 2.99e-77   NTclustered gi|2082243702|ref|XM_043061450.1| 3055 g110379 i0 82.303 86.2471590909091 356 55 100 8 1 352 1024 1375 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g204250v5), mRNA blastn 30359 305 0.99016393442623 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
24063021 24063021 PRJNA520845_P_NODE_102859_length_367_cov_1.047619_g101360_i0 PRJNA520845 102859 367 1.047619 3.84476173 Eukaryota 2759 Plants Plants 200 1.18e-46   NTclustered gi|2082239556|ref|XM_001699745.2| 3055 g101360 i0 78.641 41.7656675749319 309 60 83 5 1 306 388 83 Chlamydomonas reinhardtii ribosomal protein S3 (CHLRE_02g102250v5), mRNA blastn 15328 200 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;