RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA520845" and tax_clade = "Haptista"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 4 ✖

bioproject 1

  • PRJNA520845 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6868645 6868645 PRJNA520845_P_NODE_238826_length_246_cov_1.335260_g237327_i0 PRJNA520845 238826 246 1.33526 3.2847396 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 52.8 0.022   NTclustered gi|551585087|ref|XM_005777783.1| 280463 g237327 i0 100 0.113821138211382 28 0 11 0 131 158 371 344 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
6870190 6870190 PRJNA520845_P_NODE_58366_length_488_cov_2.134940_g56871_i0 PRJNA520845 58366 488 2.13494 10.4185072 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 252 4.37e-62   NTclustered gi|551548842|ref|XM_005762007.1| 280463 g56871 i0 83.214 52.9938524590164 280 41 57 3 138 414 101 377 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 25861 252 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
9417634 9417634 PRJNA520845_P_NODE_185588_length_273_cov_1.540000_g184089_i0 PRJNA520845 185588 273 1.54 4.2042 Dicrateria rotunda 2703868 Haptophyta other_Eukaryota 244 3.85e-60   NTclustered gi|259419544|emb|FN392559.1| 2703868 g184089 i0 84.337 16.2087912087912 249 39 91 0 24 272 36 284 Imantonia rotunda partial mRNA for ADP-ribosylation factor 3, contig 10068 blastn 4425 244 1 Eukaryota Haptista   Haptophyta   Isochrysidales Isochrysidaceae Dicrateria Dicrateria rotunda
19616807 19616807 PRJNA520845_P_NODE_233036_length_247_cov_1.844828_g231537_i0 PRJNA520845 233036 247 1.844828 4.55672516 Sphaerastrum fockii 299901 Root_unresolved Root_unresolved 178 3.53e-40   NTclustered gi|61187370|gb|AY752991.1| 299901 g231537 i0 94.783 48.7854251012146 115 5 47 1 1 115 1986 2099 Sphaerastrum fockii 28S ribosomal RNA gene, partial sequence blastn 12050 178 1 Eukaryota Haptista     Centroplasthelida Pterocystida Heterophryidae Sphaerastrum Sphaerastrum fockii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;