RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA520845" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA520845 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1764420 1764420 PRJNA520845_P_NODE_174342_length_282_cov_1.473684_g172843_i0 PRJNA520845 174342 282 1.473684 4.15578888 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17 1619070 Bacteria Bacteria 494 3.6e-135   NTclustered gi|837350690|gb|CP011211.1| 1619070 g172843 i0 98.227 1 282 5 100 0 1 282 246319 246600 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17, complete genome blastn 282 494 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17
8143060 8143060 PRJNA520845_P_NODE_204927_length_257_cov_2.445652_g203428_i0 PRJNA520845 204927 257 2.445652 6.28532564 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 171 6.189999999999999e-38   NTclustered gi|1958075319|gb|CP064995.1| 2026720 g203428 i0 78.74 0.988326848249027 254 54 99 0 2 255 670062 669809 Candidatus Saccharibacteria bacterium isolate Hjor_18-Q3-R7-51_MAXAC.102_uni chromosome, complete genome blastn 254 171 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
15791315 15791315 PRJNA520845_P_NODE_156053_length_298_cov_2.053333_g154554_i0 PRJNA520845 156053 298 2.053333 6.11893234 candidate division SR1 bacterium RAAC1_SR1_1 1394709 Bacteria Bacteria 52.8 0.028   NTclustered gi|563351663|gb|CP006913.1| 1394709 g154554 i0 100 0.0939597315436242 28 0 9 0 146 173 944962 944989 Candidate division SR1 bacterium RAAC1_SR1_1 chromosome, complete genome blastn 28 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium RAAC1_SR1_1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;