RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA515078" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA515078 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12589894 12589894 PRJNA515078_P_NODE_23910_length_177_cov_2.228571_g23677_i0 PRJNA515078 23910 177 2.228571 3.94457067 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 126 8.69e-25   NTclustered gi|2587729139|gb|OR478975.1| 56777 g23677 i0 81.29 29.5819209039548 155 29 88 0 16 170 773 619 Trichomonas gallinae elongation factor 1 alpha (EF1A) mRNA, complete cds blastn 5236 126 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas gallinae
19612831 19612831 PRJNA515078_P_NODE_16256_length_216_cov_1.960894_g16023_i0 PRJNA515078 16256 216 1.960894 4.23553104 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 56.5 0.001   NTclustered gi|2806440984|ref|XM_068497330.1| 1144522 g16023 i0 100 0.138888888888889 30 0 14 0 177 206 242 213 Tritrichomonas foetus uncharacterized protein (TRFO_13569), partial mRNA blastn 30 56.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;