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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA515078" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA515078 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1761975 1761975 PRJNA515078_P_NODE_12722_length_249_cov_1.448113_g12489_i0 PRJNA515078 12722 249 1.448113 3.60580137 Caenorhabditis briggsae 6238 Nematoda Nematoda 198 2.74e-46   NTclustered gi|268577906|ref|XM_002643890.1| 6238 g12489 i0 86.592 47.429718875502 179 24 72 0 12 190 517 695 Caenorhabditis briggsae Protein CBR-FTT-2 (Cbr-ftt-2), partial mRNA blastn 11810 198 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
8139893 8139893 PRJNA515078_P_NODE_23147_length_180_cov_1.636364_g22914_i0 PRJNA515078 23147 180 1.636364 2.9454552 Pristionchus pauli 376545 Nematoda Nematoda 110 8.93e-20   NTclustered gi|150982019|gb|EF634598.1| 376545 g22914 i0 93.243 1.31111111111111 74 5 41 0 63 136 37 110 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 236 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
11965517 11965517 PRJNA515078_P_NODE_14910_length_227_cov_1.847368_g14677_i0 PRJNA515078 14910 227 1.847368 4.19352536 Caenorhabditis briggsae 6238 Nematoda Nematoda 54.7 0.006   NTclustered gi|11095099|gb|AC084653.1|CBRG45O14 6238 g14677 i0 96.875 0.140969162995595 32 1 14 0 2 33 14527 14496 Caenorhabditis briggsae cosmid G45O14, complete sequence blastn 32 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
11965706 11965706 PRJNA515078_P_NODE_8990_length_304_cov_3.584270_g8757_i0 PRJNA515078 8990 304 3.58427 10.8961808 Pristionchus hoplostomus 1355913 Nematoda Nematoda 167 9.7e-37   NTclustered gi|524845312|gb|KC819366.1| 1355913 g8757 i0 81.166 43.875 223 28 71 11 84 299 264 49 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 13338 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
12589890 12589890 PRJNA515078_P_NODE_22850_length_181_cov_4.215278_g22617_i0 PRJNA515078 22850 181 4.215278 7.62965318 Metazoa 33208 Nematoda Nematoda 154 4.1e-33   NTclustered gi|156481|gb|M23433.1|CELUBIA 6239 g22617 i0 86.014 92.939226519337 143 20 80 0 1 143 2250 2108 C.elegans polyubiquitin (UbiA) gene, complete cds blastn 16822 154 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
13240741 13240741 PRJNA515078_P_NODE_23431_length_179_cov_1.605634_g23198_i0 PRJNA515078 23431 179 1.605634 2.87408486 Strongyloides papillosus 174720 Nematoda Nematoda 202 1.42e-47   NTclustered gi|687022656|emb|LM525570.1| 174720 g23198 i0 87.079 94.5139664804469 178 23 99 0 2 179 200485 200662 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000005 blastn 16918 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
15789629 15789629 PRJNA515078_P_NODE_6053_length_383_cov_2.832370_g5820_i0 PRJNA515078 6053 383 2.83237 10.8479771 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 187 9.599999999999999e-43   NTclustered gi|150984457|gb|EF634871.1| 452809 g5820 i0 77.532 22.8041775456919 316 67 82 3 28 341 329 16 Pristionchus sp. 15 RS5229 small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 8734 187 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
17063995 17063995 PRJNA515078_P_NODE_11434_length_264_cov_2.687225_g11201_i0 PRJNA515078 11434 264 2.687225 7.094274 Strongyloides papillosus 174720 Nematoda Nematoda 60.2 1.44e-4   NTclustered gi|687022673|emb|LM525587.1| 174720 g11201 i0 90.909 0.166666666666667 44 4 17 0 62 105 102403 102446 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000010 blastn 44 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
23439305 23439305 PRJNA515078_P_NODE_26979_length_167_cov_2.153846_g26746_i0 PRJNA515078 26979 167 2.153846 3.59692282 Levipalatum texanum 1486449 Nematoda Nematoda 143 8.08e-30   NTclustered gi|610559467|gb|KJ395558.1| 1486449 g26746 i0 84.564 2.40119760479042 149 17 87 4 14 159 220 365 Levipalatum texanum ribosomal protein (rpl-23) gene, partial cds blastn 401 143 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Levipalatum Levipalatum texanum
24712848 24712848 PRJNA515078_P_NODE_14040_length_235_cov_2.212121_g13807_i0 PRJNA515078 14040 235 2.212121 5.19848435 Caenorhabditis briggsae 6238 Nematoda Nematoda 161 3.3499999999999996e-35   NTclustered gi|156347|gb|M26906.1|CELHSP3B 6238 g13807 i0 80.09 57.1957446808511 221 40 93 4 17 235 1929 1711 C.briggsae heat shock protein 3 gene, complete cds blastn 13441 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
24713031 24713031 PRJNA515078_P_NODE_7680_length_333_cov_2.527027_g7447_i0 PRJNA515078 7680 333 2.527027 8.41499991 Diplogastrellus gracilis 669117 Nematoda Nematoda 202 2.94e-47   NTclustered gi|256709130|gb|GQ422217.1| 669117 g7447 i0 79.861 71.5795795795796 288 48 85 8 51 333 723 441 Diplogastrellus gracilis large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 23836 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus gracilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;