RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA515078" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA515078 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6214404 6214404 PRJNA515078_P_NODE_16365_length_215_cov_10.629213_g16132_i0 PRJNA515078 16365 215 10.629213 22.85280795 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 176 1.08e-39   NTclustered gi|2037992749|ref|XM_041609273.1| 7654 g16132 i0 86.709 102.651162790698 158 21 73 0 35 192 2208 2365 PREDICTED: Lytechinus variegatus polyubiquitin-C-like (LOC121415894), mRNA blastn 22070 176 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
19612839 19612839 PRJNA515078_P_NODE_17136_length_211_cov_0.896552_g16903_i0 PRJNA515078 17136 211 0.896552 1.89172472 Lytechinus pictus 7653 Echinodermata other_Eukaryota 71.3 5.12e-8   NTclustered gi|2707418199|ref|XM_054900116.2| 7653 g16903 i0 83.117 0.5260663507109 77 13 36 0 8 84 361 437 PREDICTED: Lytechinus pictus arylsulfatase-like (LOC129262077), mRNA blastn 111 71.3 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
24712902 24712902 PRJNA515078_P_NODE_21420_length_187_cov_2.086667_g21187_i0 PRJNA515078 21420 187 2.086667 3.90206729 Acanthaster planci 133434 Echinodermata other_Eukaryota 56.5 0.001   NTclustered gi|1229183801|ref|XM_022249885.1| 133434 g21187 i0 100 0.481283422459893 30 0 16 0 158 187 1500 1529 PREDICTED: Acanthaster planci protein starmaker-like (LOC110987288), transcript variant X1, mRNA blastn 90 56.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;