RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA515078" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA515078 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8140006 8140006 PRJNA515078_P_NODE_6507_length_367_cov_2.936364_g6274_i0 PRJNA515078 6507 367 2.936364 10.77645588 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 189 2.55e-43   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g6274 i0 84.375 53.1961852861035 192 30 52 0 36 227 312 121 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 19523 189 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9415096 9415096 PRJNA515078_P_NODE_9668_length_292_cov_1.411765_g9435_i0 PRJNA515078 9668 292 1.411765 4.1223538 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 165 3.3300000000000003e-36   NTclustered gi|470526398|ref|XM_004356698.1| 1257118 g9435 i0 78.862 2.45890410958904 246 50 84 2 47 291 52 296 Acanthamoeba castellanii str. Neff cytochrome c, putative (ACA1_175250), partial mRNA blastn 718 165 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19612914 19612914 PRJNA515078_P_NODE_2636_length_599_cov_1.790036_g2423_i0 PRJNA515078 2636 599 1.790036 10.72231564 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 440 1.0799999999999999e-118   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g2423 i0 80.132 93.5058430717863 604 108 99 10 1 598 2314 1717 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 56010 440 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22163586 22163586 PRJNA515078_P_NODE_18438_length_202_cov_1.872727_g18205_i0 PRJNA515078 18438 202 1.872727 3.78290854 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 285 1.59e-72   NTclustered gi|659103923|gb|KJ569725.1| 1512276 g18205 i0 92.157 26.9257425742574 204 12 100 4 1 202 664 865 Cochliopodium kieliense clone 9601 18S ribosomal RNA gene, partial sequence blastn 5439 285 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
24713037 24713037 PRJNA515078_P_NODE_8600_length_312_cov_1.410909_g8367_i0 PRJNA515078 8600 312 1.410909 4.40203608 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 56.5 0.002   NTclustered gi|470423488|ref|XM_004337555.1| 1257118 g8367 i0 94.595 1.31410256410256 37 1 12 1 183 219 78 43 Acanthamoeba castellanii str. Neff ribosomal protein L23, putative (ACA1_164710), partial mRNA blastn 410 56.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;