RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA515078" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA515078 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6214480 6214480 PRJNA515078_P_NODE_825_length_1043_cov_4.155070_g712_i0 PRJNA515078 825 1043 4.15507 43.3373801 Bdellovibrio 958 Bacteria Bacteria 231 1.2699999999999995e-55   NTclustered gi|2800927921|gb|CP168969.1| 959 g712 i0 76.238 40.5474592521572 505 80 45 20 1 471 828992 829490 Bdellovibrio bacteriovorus strain Bd10 chromosome, complete genome blastn 42291 231 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
10039474 10039474 PRJNA515078_P_NODE_17948_length_205_cov_2.392857_g17715_i0 PRJNA515078 17948 205 2.392857 4.90535685 Pseudobdellovibrio 2862745 Bacteria Bacteria 209 1e-49   NTclustered gi|507148233|ref|NR_103040.1| 453816 g17715 i0 85.644 29.5609756097561 202 25 98 4 1 200 1307 1506 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 6060 209 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
15139053 15139053 PRJNA515078_P_NODE_5752_length_394_cov_1.879552_g5519_i0 PRJNA515078 5752 394 1.879552 7.40543488 Bdellovibrio 958 Bacteria Bacteria 231 4.509999999999999e-56   NTclustered gi|2800920897|gb|CP168968.1| 959 g5519 i0 80.495 69.7208121827411 323 45 96 9 27 332 1607696 1608017 Bdellovibrio bacteriovorus strain Bd5 chromosome, complete genome blastn 27470 233 0.991416309012876 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
24712831 24712831 PRJNA515078_P_NODE_11720_length_260_cov_2.798206_g11487_i0 PRJNA515078 11720 260 2.798206 7.2753356 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 364 2.679999999999999e-96   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g11487 i0 91.954 213.573076923077 261 20 100 1 1 260 3447430 3447690 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 55529 364 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;