RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA515078" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA515078 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8139834 8139834 PRJNA515078_P_NODE_14207_length_233_cov_2.867347_g13974_i0 PRJNA515078 14207 233 2.867347 6.68091851 Auxenochlorella protothecoides 3075 Plants Plants 145 3.34e-30   NTclustered gi|760448344|ref|XM_011402939.1| 3075 g13974 i0 80.749 77.9098712446352 187 34 80 2 15 200 1 186 Auxenochlorella protothecoides 60S ribosomal protein L15 partial mRNA blastn 18153 145 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
8140021 8140021 PRJNA515078_P_NODE_8527_length_313_cov_2.065217_g8294_i0 PRJNA515078 8527 313 2.065217 6.46412921 Chlamydomonas reinhardtii 3055 Plants Plants 171 7.75e-38   NTclustered gi|2082248650|ref|XM_043063418.1| 3055 g8294 i0 78.462 24.3003194888179 260 56 83 0 7 266 598 857 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g290950v5), mRNA blastn 7606 171 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
17064056 17064056 PRJNA515078_P_NODE_17854_length_206_cov_1.591716_g17621_i0 PRJNA515078 17854 206 1.591716 3.27893496 Scherffelia dubia 3190 Plants Plants 75 3.84e-9   NTclustered gi|1783497212|ref|NC_045363.1| 3190 g17621 i0 77.536 26.5922330097087 138 21 66 9 49 178 31508 31373 Scherffelia dubia culture SAG:17.86 mitochondrion, complete genome blastn 5478 75 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Scherffelia Scherffelia dubia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;