RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA515078" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA515078 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4313703 4313703 PRJNA515078_P_NODE_15904_length_219_cov_1.714286_g15671_i0 PRJNA515078 15904 219 1.714286 3.75428634 Sedimentisphaera salicampi 1941349 Bacteria Bacteria 52.8 0.019   NTclustered gi|1188493932|gb|CP021023.1| 1941349 g15671 i0 100 0.127853881278539 28 0 13 0 172 199 416787 416814 Sedimentisphaera salicampi strain ST-PulAB-D4 chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Sedimentisphaerales Sedimentisphaeraceae Sedimentisphaera Sedimentisphaera salicampi
9414940 9414940 PRJNA515078_P_NODE_18708_length_201_cov_0.951220_g18475_i0 PRJNA515078 18708 201 0.95122 1.9119522 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 309 9.39e-80   NTclustered gi|1927958621|gb|CP054186.1| 2026777 g18475 i0 94.924 79.452736318408 197 10 98 0 5 201 1866403 1866207 MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome blastn 15970 309 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
14515896 14515896 PRJNA515078_P_NODE_8112_length_322_cov_2.280702_g7879_i0 PRJNA515078 8112 322 2.280702 7.34386044 Luteolibacter luteus 2728835 Bacteria Bacteria 54.7 0.008   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g7879 i0 100 0.0900621118012422 29 0 9 0 241 269 1840248 1840220 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
24712819 24712819 PRJNA515078_P_NODE_10580_length_277_cov_1.300000_g10347_i0 PRJNA515078 10580 277 1.3 3.601 Fontisphaera persica 2974023 Bacteria Bacteria 230 1.1e-55   NTclustered gi|2439237958|gb|CP116615.1| 2974023 g10347 i0 82.482 105.335740072202 274 36 96 8 1 265 3861307 3861037 Fontisphaera persica strain B-154 chromosome, complete genome blastn 29178 230 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Fontisphaeraceae Fontisphaera Fontisphaera persica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;