RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where analysis = "blastn", bioproject = "PRJNA515078" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 19 ✖

bioproject 1

  • PRJNA515078 · 19 ✖

analysis 1

  • blastn · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
486933 486933 PRJNA515078_P_NODE_8201_length_320_cov_1.802120_g7968_i0 PRJNA515078 8201 320 1.80212 5.766784 Entamoeba dispar 46681 Evosea other_Eukaryota 217 1.01e-51   NTclustered gi|167377343|ref|XM_001734312.1| 370354 g7968 i0 84.234 20.66875 222 35 69 0 4 225 247 26 Entamoeba dispar SAW760 ADP-ribosylation factor, arf, putative (EDI_275790), partial mRNA blastn 6614 217 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
1762047 1762047 PRJNA515078_P_NODE_2282_length_644_cov_5.276771_g2076_i0 PRJNA515078 2282 644 5.276771 33.98240524 Heterostelium album 2086695 Evosea other_Eukaryota 375 3.339999999999999e-99   NTclustered gi|1160573488|ref|XM_020576922.1| 670386 g2076 i0 82.127 2.08074534161491 442 75 68 4 13 452 1 440 Polysphondylium pallidum PN500 Ras GTPase (rasG), partial mRNA blastn 1340 375 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
1762132 1762132 PRJNA515078_P_NODE_3422_length_523_cov_2.705761_g3192_i0 PRJNA515078 3422 523 2.705761 14.15113003 Dictyostelium purpureum 5786 Evosea other_Eukaryota 327 7.610000000000001e-85   NTclustered gi|330845407|ref|XM_003294531.1| 5786 g3192 i0 79.526 16.1625239005736 464 91 88 4 38 499 526 65 Dictyostelium purpureum uncharacterized protein (rapA), mRNA blastn 8453 327 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
3037799 3037799 PRJNA515078_P_NODE_10243_length_282_cov_1.424490_g10010_i0 PRJNA515078 10243 282 1.42449 4.0170618 Acytostelium subglobosum 361139 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|831754795|ref|XM_012892771.1| 1410327 g10010 i0 100 0.106382978723404 30 0 11 0 38 67 222 193 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 30 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
6864546 6864546 PRJNA515078_P_NODE_16226_length_216_cov_135.351955_g15993_i0 PRJNA515078 16226 216 135.351955 292.3602228 Amoebozoa sp. amCP10 1246470 Root_unresolved Root_unresolved 383 5.95e-102   NTclustered gi|410108449|gb|JX312793.1| 1246470 g15993 i0 98.611 58.537037037037 216 3 100 0 1 216 1550 1335 Amoebozoa sp. amCP10 18S ribosomal RNA gene, partial sequence blastn 12644 383 1 Eukaryota Amoebozoa             Amoebozoa sp. amCP10
6864714 6864714 PRJNA515078_P_NODE_6186_length_378_cov_1.988270_g5953_i0 PRJNA515078 6186 378 1.98827 7.5156606 Dictyostelium purpureum 5786 Evosea other_Eukaryota 287 9.07e-73   NTclustered gi|330805726|ref|XM_003290782.1| 5786 g5953 i0 81.337 19.1111111111111 359 61 94 6 11 366 1531 1886 Dictyostelium purpureum cell division cycle protein 48 (DICPUDRAFT_81538), partial mRNA blastn 7224 287 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
8139940 8139940 PRJNA515078_P_NODE_27867_length_165_cov_1.218750_g27634_i0 PRJNA515078 27867 165 1.21875 2.0109375 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.014   NTclustered gi|66821092|ref|XM_638977.1| 352472 g27634 i0 100 0.16969696969697 28 0 17 0 31 58 3554 3581 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0274537) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
8140006 8140006 PRJNA515078_P_NODE_6507_length_367_cov_2.936364_g6274_i0 PRJNA515078 6507 367 2.936364 10.77645588 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 189 2.55e-43   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g6274 i0 84.375 53.1961852861035 192 30 52 0 36 227 312 121 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 19523 189 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9415096 9415096 PRJNA515078_P_NODE_9668_length_292_cov_1.411765_g9435_i0 PRJNA515078 9668 292 1.411765 4.1223538 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 165 3.3300000000000003e-36   NTclustered gi|470526398|ref|XM_004356698.1| 1257118 g9435 i0 78.862 2.45890410958904 246 50 84 2 47 291 52 296 Acanthamoeba castellanii str. Neff cytochrome c, putative (ACA1_175250), partial mRNA blastn 718 165 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11965557 11965557 PRJNA515078_P_NODE_20850_length_190_cov_1.274510_g20617_i0 PRJNA515078 20850 190 1.27451 2.421569 Dictyostelium purpureum 5786 Evosea other_Eukaryota 54.7 0.005   NTclustered gi|330794860|ref|XM_003285447.1| 5786 g20617 i0 100 0.3 29 0 15 0 54 82 3621 3593 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_76420), partial mRNA blastn 57 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
11965661 11965661 PRJNA515078_P_NODE_34270_length_150_cov_2.247788_g34037_i0 PRJNA515078 34270 150 2.247788 3.371682 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 156 9.049999999999999e-34   NTclustered gi|221185864|gb|FJ577811.1| 590481 g34037 i0 88.148 62.06 135 10 89 5 18 150 1098 1228 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 9309 156 1 Eukaryota Amoebozoa             uncultured Amoebozoa
13240786 13240786 PRJNA515078_P_NODE_30451_length_158_cov_2.900826_g30218_i0 PRJNA515078 30451 158 2.900826 4.58330508 Acytostelium subglobosum 361139 Evosea other_Eukaryota 117 4.570000000000001e-22   NTclustered gi|831768525|ref|XM_012896976.1| 1410327 g30218 i0 82.222 0.854430379746835 135 24 85 0 1 135 248 382 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 135 117 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
18338581 18338581 PRJNA515078_P_NODE_33055_length_153_cov_1.284483_g32822_i0 PRJNA515078 33055 153 1.284483 1.96525899 Heterostelium album 2086695 Evosea other_Eukaryota 54.7 0.003   NTclustered gi|1160571680|ref|XM_020575334.1| 670386 g32822 i0 100 0.555555555555556 29 0 19 0 117 145 75 47 Polysphondylium pallidum PN500 hypothetical protein partial mRNA blastn 85 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
19612807 19612807 PRJNA515078_P_NODE_13056_length_245_cov_1.697115_g12823_i0 PRJNA515078 13056 245 1.697115 4.15793175 Dictyostelium purpureum 5786 Evosea other_Eukaryota 60.2 1.32e-4   NTclustered gi|330797680|ref|XM_003286839.1| 5786 g12823 i0 100 1.02448979591837 32 0 13 0 173 204 856 887 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_77768), partial mRNA blastn 251 60.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
19612914 19612914 PRJNA515078_P_NODE_2636_length_599_cov_1.790036_g2423_i0 PRJNA515078 2636 599 1.790036 10.72231564 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 440 1.0799999999999999e-118   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g2423 i0 80.132 93.5058430717863 604 108 99 10 1 598 2314 1717 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 56010 440 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20888870 20888870 PRJNA515078_P_NODE_15977_length_218_cov_3.348066_g15744_i0 PRJNA515078 15977 218 3.348066 7.29878388 Dictyostelium purpureum 5786 Evosea other_Eukaryota 178 3.0499999999999993e-40   NTclustered gi|330840718|ref|XM_003292310.1| 5786 g15744 i0 81.905 15.9495412844037 210 38 96 0 1 210 629 420 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_50380), mRNA blastn 3477 178 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
22163586 22163586 PRJNA515078_P_NODE_18438_length_202_cov_1.872727_g18205_i0 PRJNA515078 18438 202 1.872727 3.78290854 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 285 1.59e-72   NTclustered gi|659103923|gb|KJ569725.1| 1512276 g18205 i0 92.157 26.9257425742574 204 12 100 4 1 202 664 865 Cochliopodium kieliense clone 9601 18S ribosomal RNA gene, partial sequence blastn 5439 285 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
23439280 23439280 PRJNA515078_P_NODE_24019_length_177_cov_1.392857_g23786_i0 PRJNA515078 24019 177 1.392857 2.46535689 Acytostelium subglobosum 361139 Evosea other_Eukaryota 119 1.45e-22   NTclustered gi|831770792|ref|XM_012897653.1| 1410327 g23786 i0 88 0.564971751412429 100 12 56 0 78 177 1501 1402 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 100 119 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
24713037 24713037 PRJNA515078_P_NODE_8600_length_312_cov_1.410909_g8367_i0 PRJNA515078 8600 312 1.410909 4.40203608 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 56.5 0.002   NTclustered gi|470423488|ref|XM_004337555.1| 1257118 g8367 i0 94.595 1.31410256410256 37 1 12 1 183 219 78 43 Acanthamoeba castellanii str. Neff ribosomal protein L23, putative (ACA1_164710), partial mRNA blastn 410 56.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;