RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA513467" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA513467 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
486664 486664 PRJNA513467_S_NODE_5921_length_170_cov_1.714286_g5898_i0 PRJNA513467 5921 170 1.714286 2.9142862 Pleodorina starrii 330485 Plants Plants 243 7.859999999999999e-60   NTclustered gi|484759769|ref|NC_021109.1| 330485 g5898 i0 92.398 123.229411764706 171 11 100 2 1 170 123721 123890 Pleodorina starrii plastid, complete genome blastn 20949 243 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Pleodorina Pleodorina starrii
3037709 3037709 PRJNA513467_S_NODE_2063_length_250_cov_1.647887_g2040_i0 PRJNA513467 2063 250 1.647887 4.1197175 Picocystis salinarum 88271 Plants Plants 95.3 3.71e-15   NTclustered gi|371782106|emb|HE610138.1| 88271 g2040 i0 90.278 27.172 72 7 29 0 1 72 2563 2492 Picocystis salinarum 5.8S rRNA gene, 28S rRNA gene (partial) and ITS2, strain CCMP1897 blastn 6793 95.3 1 Eukaryota   Viridiplantae Chlorophyta Picocystophyceae Picocystales Picocystaceae Picocystis Picocystis salinarum
5590482 5590482 PRJNA513467_S_NODE_2665_length_226_cov_1.703704_g2642_i0 PRJNA513467 2665 226 1.703704 3.85037104 Paradoxia multiseta 249350 Plants Plants 372 1.36e-98   NTclustered gi|723457039|ref|NC_025540.1| 249350 g2642 i0 96.46 100.681415929204 226 7 100 1 1 226 3579 3355 Paradoxia multiseta culture-collection SAG:18.84 chloroplast, complete genome blastn 22754 372 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Paradoxia Paradoxia multiseta
8763894 8763894 PRJNA513467_S_NODE_4067_length_194_cov_3.114650_g4044_i0 PRJNA513467 4067 194 3.11465 6.042421 Desmochloris 138596 Plants Plants 298 1.95e-76   NTclustered gi|371782086|emb|HE610118.1| 138176 g4044 i0 94.33 101.190721649485 194 11 100 0 1 194 985 792 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 19631 298 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
9414822 9414822 PRJNA513467_S_NODE_2848_length_220_cov_32.595628_g2825_i0 PRJNA513467 2848 220 32.595628 71.7103816 uncultured Apatococcus 1229086 Plants Plants 407 3.61e-109   NTclustered gi|1031961072|gb|KX025113.1| 1229086 g2825 i0 100 100.568181818182 220 0 100 0 1 220 1183 964 Uncultured Apatococcus clone GOGs_K31 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 22125 407 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Apatococcus
12589843 12589843 PRJNA513467_S_NODE_4890_length_182_cov_1.951724_g4867_i0 PRJNA513467 4890 182 1.951724 3.55213768 Chlorophyta 3041 Plants Plants 215 1.87e-51   NTclustered gi|725651062|ref|NC_025538.1| 160069 g4867 i0 87.912 92.4725274725275 182 22 100 0 1 182 96810 96629 Gloeotilopsis sterilis culture-collection UTEX:1704 chloroplast, complete genome blastn 16830 215 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Ulotrichaceae Gloeotilopsis Gloeotilopsis sterilis
13240570 13240570 PRJNA513467_S_NODE_3191_length_212_cov_1.400000_g3168_i0 PRJNA513467 3191 212 1.4 2.968 Chloroidium ellipsoideum 63676 Plants Plants 320 4.63e-83   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g3168 i0 93.868 96.8632075471698 212 13 100 0 1 212 77 288 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 20535 320 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
15138955 15138955 PRJNA513467_S_NODE_3432_length_206_cov_2.443787_g3409_i0 PRJNA513467 3432 206 2.443787 5.03420122 Chloroidium 1034479 Plants Plants 348 2.05e-91   NTclustered gi|694226606|gb|KM116463.1| 63675 g3409 i0 97.101 99.5436893203884 207 4 100 2 1 206 2670 2465 Chloroidium angustoellipsoideum strain SAG 2041 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 20506 348 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium angustoellipsoideum
16413585 16413585 PRJNA513467_S_NODE_933_length_340_cov_3.042904_g910_i0 PRJNA513467 933 340 3.042904 10.3458736 Heterochlamydomonas 179865 Plants Plants 401 2.769999999999999e-107   NTclustered gi|33945399|gb|AY206708.1| 179866 g910 i0 88.012 100.85 342 37 100 4 1 340 1802 1463 Heterochlamydomonas inaequalis UTEX 1705 28S ribosomal RNA gene, partial sequence blastn 34289 401 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Heterochlamydomonas Heterochlamydomonas inaequalis
20888760 20888760 PRJNA513467_S_NODE_3017_length_216_cov_2.379888_g2994_i0 PRJNA513467 3017 216 2.379888 5.14055808 Chloroidium ellipsoideum 63676 Plants Plants 339 1.3099999999999998e-88   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g2994 i0 94.907 100.935185185185 216 11 100 0 1 216 3042 2827 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 21802 339 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
22163461 22163461 PRJNA513467_S_NODE_2778_length_222_cov_2.886486_g2755_i0 PRJNA513467 2778 222 2.886486 6.40799892 Chloroidium sp. KL-2023a 3031248 Plants Plants 222 1.42e-53   NTclustered gi|2450595352|gb|ON986219.1| 3031248 g2755 i0 96.992 17.7432432432432 133 3 60 1 1 133 220025 219894 Chloroidium sp. KL-2023a clone 2023 chloroplast, complete genome blastn 3939 222 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. KL-2023a

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;