RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA512489" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA512489 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5590453 5590453 PRJNA512489_S_NODE_705_length_206_cov_3.104294_g700_i0 PRJNA512489 705 206 3.104294 6.39484564 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 124 3.76e-24   NTclustered gi|2795061008|ref|XM_067940276.1| 4785 g700 i0 88.35 10.8058252427184 103 12 50 0 20 122 343 445 Phytophthora cinnamomi 60S ribosomal protein L23a (IUM83_15460), partial mRNA blastn 2226 124 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
13240524 13240524 PRJNA512489_S_NODE_1131_length_178_cov_4.088889_g1126_i0 PRJNA512489 1131 178 4.088889 7.27822242 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 329 6.21e-86   NTclustered gi|2088238071|ref|NC_056910.1| 88167 g1126 i0 100 3 178 0 100 0 1 178 15616 15793 Poterioochromonas malhamensis strain SZCZR2049 plastid, complete genome blastn 534 329 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;