RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA512103" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA512103 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5589946 5589946 PRJNA512103_P_NODE_29225_length_173_cov_1.112903_g28813_i0 PRJNA512103 29225 173 1.112903 1.92532219 Bradybaena similaris 145626 Mollusca Mollusca 56.5 0.001   NTclustered gi|2912988862|dbj|AP039593.1| 145626 g28813 i0 100 0.335260115606936 30 0 17 0 36 65 64624813 64624842 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 12, sequence blastn 58 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
10690090 10690090 PRJNA512103_P_NODE_34789_length_159_cov_2.027273_g34377_i0 PRJNA512103 34789 159 2.027273 3.22336407 Conus leopardus 101306 Mollusca Mollusca 56.5 0.001   NTclustered gi|87242682|gb|DQ311057.1| 101306 g34377 i0 100 0.188679245283019 30 0 19 0 122 151 262 233 Conus leopardus alpha conotoxin Lp1.6 gene, partial cds blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neogastropoda Conidae Conus Conus leopardus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;