RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA512103" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA512103 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4939110 4939110 PRJNA512103_P_NODE_8304_length_439_cov_1.979487_g7893_i0 PRJNA512103 8304 439 1.979487 8.68994793 Bigyra 2683628 SAR_Eukaryotes SAR_Eukaryotes 272 2.99e-68   NTclustered gi|855314976|ref|XM_013043241.1| 12968 g7893 i0 79.389 88.2847380410023 393 75 89 3 41 430 834 445 Blastocystis hominis mRNA blastn 38757 272 1 Eukaryota Sar     Bigyra Opalinata Blastocystidae Blastocystis Blastocystis hominis
13240038 13240038 PRJNA512103_P_NODE_29051_length_173_cov_2.274194_g28639_i0 PRJNA512103 29051 173 2.274194 3.93435562 Diplophrys mutabilis 1407010 SAR_Eukaryotes SAR_Eukaryotes 285 1.32e-72   NTclustered gi|550533550|dbj|AB856527.1| 1407010 g28639 i0 100 24.8670520231214 154 0 89 0 11 164 1493 1646 Diplophrys mutabilis gene for 18S ribosomal RNA, partial sequence blastn 4302 285 1 Eukaryota Sar     Bigyra Amphitremida   Diplophrys Diplophrys mutabilis
14514383 14514383 PRJNA512103_P_NODE_11292_length_339_cov_2.427586_g10880_i0 PRJNA512103 11292 339 2.427586 8.22951654 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 595 1.1799999999999996e-165   NTclustered gi|238617602|gb|FJ973377.1| 188950 g10880 i0 99.39 96.9616519174041 328 2 97 0 3 330 11 338 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 32870 595 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
17062688 17062688 PRJNA512103_P_NODE_10254_length_368_cov_2.426332_g9842_i0 PRJNA512103 10254 368 2.426332 8.92890176 Diplophrys mutabilis 1407010 SAR_Eukaryotes SAR_Eukaryotes 566 1.0099999999999999e-156   NTclustered gi|550533550|dbj|AB856527.1| 1407010 g9842 i0 95.278 50.3994565217391 360 12 97 5 1 356 1660 2018 Diplophrys mutabilis gene for 18S ribosomal RNA, partial sequence blastn 18547 566 1 Eukaryota Sar     Bigyra Amphitremida   Diplophrys Diplophrys mutabilis
17063337 17063337 PRJNA512103_P_NODE_2774_length_1015_cov_4.642857_g2502_i0 PRJNA512103 2774 1015 4.642857 47.12499855 Diplophrys mutabilis 1407010 SAR_Eukaryotes SAR_Eukaryotes 1099 0   NTclustered gi|550533550|dbj|AB856527.1| 1407010 g2502 i0 86.403 36.6394088669951 1037 84 99 32 1 1006 1333 323 Diplophrys mutabilis gene for 18S ribosomal RNA, partial sequence blastn 37189 1099 1 Eukaryota Sar     Bigyra Amphitremida   Diplophrys Diplophrys mutabilis
21512811 21512811 PRJNA512103_P_NODE_2097_length_1218_cov_2.473909_g1876_i0 PRJNA512103 2097 1218 2.473909 30.13221162 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 60.2 7.43e-4   NTclustered gi|2785757308|ref|XM_067215750.1| 5824 g1876 i0 100 0.0525451559934319 32 0 3 0 492 523 914 883 Plasmodium brasilianum Cg2 protein (MKS88_000468), partial mRNA blastn 64 60.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum
22787900 22787900 PRJNA512103_P_NODE_29278_length_173_cov_0.951613_g28866_i0 PRJNA512103 29278 173 0.951613 1.64629049 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 154 3.87e-33   NTclustered gi|325181596|emb|FR824063.1| 890382 g28866 i0 84.516 128.410404624277 155 24 90 0 19 173 56455 56301 Albugo laibachii Nc14, genomic contig CONTIG_18_NC14_v4_198151_220 blastn 22215 154 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;