RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA509429" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA509429 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11964052 11964052 PRJNA509429_P_NODE_51370_length_151_cov_1.284483_g50542_i0 PRJNA509429 51370 151 1.284483 1.93956933 Minisyncoccota bacterium 2053589 Bacteria Bacteria 198 1.5e-46   NTclustered gi|2556886971|gb|CP129473.1| 2053589 g50542 i0 92.199 31.7350993377483 141 9 93 2 12 151 441587 441726 MAG: Candidatus Paceibacterota bacterium isolate cMAG.23 chromosome, complete genome blastn 4792 198 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
19611290 19611290 PRJNA509429_P_NODE_41496_length_176_cov_1.758865_g40668_i0 PRJNA509429 41496 176 1.758865 3.0956024 Minisyncoccota bacterium 2053589 Bacteria Bacteria 207 2.99e-49   NTclustered gi|2556886971|gb|CP129473.1| 2053589 g40668 i0 89.571 52.8693181818182 163 17 93 0 14 176 443598 443760 MAG: Candidatus Paceibacterota bacterium isolate cMAG.23 chromosome, complete genome blastn 9305 207 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
24711204 24711204 PRJNA509429_P_NODE_24800_length_259_cov_1.776786_g23972_i0 PRJNA509429 24800 259 1.776786 4.60187574 Minisyncoccota bacterium 2053589 Bacteria Bacteria 261 3.6000000000000002e-65   NTclustered gi|2556886971|gb|CP129473.1| 2053589 g23972 i0 85.542 355.208494208494 249 36 96 0 1 249 441266 441514 MAG: Candidatus Paceibacterota bacterium isolate cMAG.23 chromosome, complete genome blastn 91999 261 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;