RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA508758" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA508758 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1759722 1759722 PRJNA508758_P_NODE_33842_length_352_cov_1.627240_g32794_i0 PRJNA508758 33842 352 1.62724 5.7278848 Patiria miniata 46514 Echinodermata other_Eukaryota 137 8.93e-28   NTclustered gi|1944827475|ref|XM_038210196.1| 46514 g32794 i0 90.385 12.0568181818182 104 10 30 0 249 352 550 447 PREDICTED: Patiria miniata calmodulin (LOC119736170), mRNA blastn 4244 137 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
14513873 14513873 PRJNA508758_P_NODE_8652_length_752_cov_2.266568_g7721_i0 PRJNA508758 8652 752 2.266568 17.04459136 Anneissia japonica 1529436 Echinodermata other_Eukaryota 1175 0   NTclustered gi|1826640151|ref|XM_033252220.1| 1529436 g7721 i0 94.855 15.9654255319149 758 30 100 2 1 752 969 215 PREDICTED: Anneissia japonica tigger transposable element-derived protein 4-like (LOC117109799), mRNA blastn 12006 1175 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
19610422 19610422 PRJNA508758_P_NODE_21676_length_431_cov_2.734637_g20629_i0 PRJNA508758 21676 431 2.734637 11.78628547 Patiria miniata 46514 Echinodermata other_Eukaryota 52.8 0.042   NTclustered gi|1944816250|ref|XM_038206001.1| 46514 g20629 i0 100 0.0649651972157773 28 0 6 0 367 394 2323 2350 PREDICTED: Patiria miniata uncharacterized LOC119732441 (LOC119732441), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;