RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA508758" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA508758 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9412703 9412703 PRJNA508758_P_NODE_37808_length_337_cov_1.011364_g36760_i0 PRJNA508758 37808 337 1.011364 3.40829668 Bodonidae sp. RS407A2 429465 Euglenozoa other_Eukaryota 259 1.75e-64   NTclustered gi|134142284|gb|EF432480.1| 429465 g36760 i0 84.615 50.2106824925816 260 40 77 0 2 261 260 1 Bodonidae sp. RS407A2 clone A1 beta tubulin (btub) mRNA, partial cds blastn 16921 259 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae   Bodonidae sp. RS407A2
18962325 18962325 PRJNA508758_P_NODE_9115_length_725_cov_2.294479_g8171_i0 PRJNA508758 9115 725 2.294479 16.63497275 Leishmania 5658 Euglenozoa other_Eukaryota 54.7 0.02   NTclustered gi|398011396|ref|XM_003858846.1| 5661 g8171 i0 100 0.08 29 0 4 0 170 198 2830 2802 Leishmania donovani hypothetical protein, conserved (LDBPK_100580), partial mRNA blastn 58 54.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania donovani

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;