RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA508758" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA508758 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1759743 1759743 PRJNA508758_P_NODE_36502_length_341_cov_1.970149_g35454_i0 PRJNA508758 36502 341 1.970149 6.71820809 Dictyostelium purpureum 5786 Evosea other_Eukaryota 76.8 1.91e-9   NTclustered gi|330792832|ref|XM_003284443.1| 5786 g35454 i0 88.889 2 63 6 18 1 8 70 1653 1714 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_52984), mRNA blastn 682 76.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
14513431 14513431 PRJNA508758_P_NODE_30852_length_366_cov_2.156997_g29804_i0 PRJNA508758 30852 366 2.156997 7.89460902 Cavenderia fasciculata 261658 Evosea other_Eukaryota 58.4 7.47e-4   NTclustered gi|470236295|ref|XM_004350051.1| 261658 g29804 i0 89.583 0.131147540983607 48 1 12 3 149 193 66 20 Cavenderia fasciculata uncharacterized protein (DFA_11158), partial mRNA blastn 48 58.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
15787141 15787141 PRJNA508758_P_NODE_20233_length_447_cov_2.740642_g19186_i0 PRJNA508758 20233 447 2.740642 12.25066974 Mastigamoeba balamuthi 108607 Evosea other_Eukaryota 132 5.4e-26   NTclustered gi|19911164|dbj|AB066364.1| 108607 g19186 i0 96.25 16.7852348993289 80 3 18 0 1 80 1622 1701 Mastigamoeba balamuthi gene for LSU rRNA, partial sequence, clone:MbR2 blastn 7503 132 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Mastigamoebidae Mastigamoeba Mastigamoeba balamuthi
17061906 17061906 PRJNA508758_P_NODE_35514_length_345_cov_1.757353_g34466_i0 PRJNA508758 35514 345 1.757353 6.06286785 Endolimax piscium 1284676 Evosea other_Eukaryota 405 2.18e-108   NTclustered gi|443299289|gb|JX101954.1| 1284676 g34466 i0 91.611 53.0608695652174 298 17 86 5 1 297 1917 1627 Endolimax piscium clone PM1 18S ribosomal RNA gene, partial sequence blastn 18306 405 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Endolimax Endolimax piscium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;