RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA506002" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA506002 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4310817 4310817 PRJNA506002_S_NODE_31784_length_303_cov_1.134783_g31538_i0 PRJNA506002 31784 303 1.134783 3.43839249 Bradybaena similaris 145626 Mollusca Mollusca 58.4 6.07e-4   NTclustered gi|2912999222|dbj|AP039605.1| 145626 g31538 i0 100 0.102310231023102 31 0 10 0 165 195 27498841 27498811 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 24, sequence blastn 31 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
7488593 7488593 PRJNA506002_S_NODE_20106_length_345_cov_0.845588_g19860_i0 PRJNA506002 20106 345 0.845588 2.9172786 Metazoa 33208 Mollusca Mollusca 60.2 1.95e-4   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g19860 i0 100 4.12173913043478 32 0 9 0 90 121 55726714 55726683 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 1422 60.2 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
8137194 8137194 PRJNA506002_S_NODE_56147_length_251_cov_0.921348_g55901_i0 PRJNA506002 56147 251 0.921348 2.31258348 Mya arenaria 6604 Mollusca Mollusca 54.7 0.006   NTclustered gi|2427501516|ref|XM_052952213.1| 6604 g55901 i0 100 2.77290836653386 29 0 12 0 8 36 143 171 PREDICTED: Mya arenaria uncharacterized LOC128237033 (LOC128237033), mRNA blastn 696 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
8137233 8137233 PRJNA506002_S_NODE_61067_length_246_cov_1.190751_g60821_i0 PRJNA506002 61067 246 1.190751 2.92924746 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.022   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g60821 i0 100 0.569105691056911 28 0 11 0 191 218 51243484 51243511 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 140 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
11962547 11962547 PRJNA506002_S_NODE_20490_length_343_cov_1.314815_g20244_i0 PRJNA506002 20490 343 1.314815 4.50981545 Dreissena polymorpha 45954 Mollusca Mollusca 52.8 0.032   NTclustered gi|1880642401|gb|MT483676.1| 45954 g20244 i0 100 0.0816326530612245 28 0 8 0 316 343 8360 8387 Dreissena polymorpha isolate DM1270 mitochondrion blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Dreissenidae Dreissena Dreissena polymorpha
11962735 11962735 PRJNA506002_S_NODE_42910_length_276_cov_1.068966_g42664_i0 PRJNA506002 42910 276 1.068966 2.95034616 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.025   NTclustered gi|2912993551|dbj|AP039598.1| 145626 g42664 i0 100 0.101449275362319 28 0 10 0 1 28 57685719 57685746 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 17, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;