RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA505837" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA505837 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7488577 7488577 PRJNA505837_S_NODE_706_length_174_cov_5.227586_g691_i0 PRJNA505837 706 174 5.227586 9.09599964 Basidiomycota 5204 Fungi Fungi 287 3.69e-73   NTclustered gi|1546635598|ref|XR_003525370.1| 76775 g691 i0 97.059 100.626436781609 170 5 98 0 5 174 2649 2818 Malassezia restricta 28S ribosomal RNA (MRET_r0004), rRNA blastn 17509 287 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
11962463 11962463 PRJNA505837_S_NODE_890_length_158_cov_3.751938_g875_i0 PRJNA505837 890 158 3.751938 5.92806204 Cryptococcus neoformans 5207 Fungi Fungi 75 2.79e-9   NTclustered gi|799342861|ref|XM_012197233.1| 235443 g875 i0 100 1.51898734177215 40 0 25 0 119 158 605 566 Cryptococcus neoformans var. grubii H99 plasma membrane proteolipid 3 (CNAG_01588), mRNA blastn 240 75 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Cryptococcaceae Cryptococcus Cryptococcus neoformans
15786391 15786391 PRJNA505837_S_NODE_653_length_181_cov_1.453947_g638_i0 PRJNA505837 653 181 1.453947 2.63164407 Malassezia restricta 76775 Fungi Fungi 206 1.12e-48   NTclustered gi|1546634712|ref|XM_027629015.1| 76775 g638 i0 100 1.22651933701657 111 0 61 0 1 111 274 384 Malassezia restricta large subunit ribosomal protein L31e (MRET_2388), partial mRNA blastn 222 206 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
24062428 24062428 PRJNA505837_S_NODE_459_length_213_cov_3.782609_g444_i0 PRJNA505837 459 213 3.782609 8.05695717 Fungi 4751 Fungi Fungi 388 1.26e-103   NTclustered gi|1042812810|gb|KT351778.1| 76775 g444 i0 99.531 99.0798122065728 213 1 100 0 1 213 94 306 Malassezia restricta isolate contig100_19323 26S ribosomal RNA gene, partial sequence blastn 21104 388 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;