RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA505329" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA505329 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3661645 3661645 PRJNA505329_P_NODE_45683_length_166_cov_0.888889_g45212_i0 PRJNA505329 45683 166 0.888889 1.47555574 Rhodothermales 1853224 Bacteria Bacteria 224 2.7799999999999995e-54   NTclustered gi|1167574847|gb|CP020382.1| 1779382 g45212 i0 92.405 178.975903614458 158 11 95 1 6 163 2905305 2905461 Rhodothermaceae bacterium RA chromosome, complete genome blastn 29710 224 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA
13237014 13237014 PRJNA505329_P_NODE_12431_length_233_cov_3.163043_g11960_i0 PRJNA505329 12431 233 3.163043 7.36989019 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 148 2.5899999999999997e-31   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g11960 i0 93.069 243.021459227468 101 7 43 0 1 101 3830958 3830858 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 56624 148 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
22160065 22160065 PRJNA505329_P_NODE_30038_length_187_cov_2.130435_g29567_i0 PRJNA505329 30038 187 2.130435 3.98391345 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 252 1.47e-62   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g29567 i0 91.304 189.866310160428 184 16 98 0 4 187 2532211 2532394 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 35505 252 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;