RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA505329" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA505329 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3034509 3034509 PRJNA505329_P_NODE_33463_length_182_cov_1.548872_g32992_i0 PRJNA505329 33463 182 1.548872 2.81894704 Nitrospira sp. 70125 Bacteria Bacteria 287 3.9e-73   NTclustered gi|2290907019|gb|CP060499.1| 70125 g32992 i0 95.556 17.0934065934066 180 7 98 1 1 179 2683260 2683439 MAG: Nitrospira sp. isolate DH1 chromosome, complete genome blastn 3111 287 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
11962021 11962021 PRJNA505329_P_NODE_18970_length_203_cov_3.707792_g18499_i0 PRJNA505329 18970 203 3.707792 7.52681776 Nitrospira sp. 70125 Bacteria Bacteria 89.8 1.35e-13   NTclustered gi|2511635996|gb|CP126122.1| 70125 g18499 i0 82.828 0.487684729064039 99 17 49 0 4 102 4464155 4464253 MAG: Nitrospira sp. isolate bin_005 chromosome blastn 99 89.8 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
19609220 19609220 PRJNA505329_P_NODE_16356_length_233_cov_2.353261_g15885_i0 PRJNA505329 16356 233 2.353261 5.48309813 Nitrospirales bacterium 2358460 Bacteria Bacteria 54.7 0.006   NTclustered gi|2575803423|emb|OY729426.1| 2358460 g15885 i0 96.875 0.137339055793991 32 1 14 0 202 233 1251867 1251836 MAG: Nitrospirales bacterium isolate 092cc351-3adc-43ff-9a6e-f4966337217d genome assembly, chromosome: 1 blastn 32 54.7 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales     Nitrospirales bacterium
23435937 23435937 PRJNA505329_P_NODE_40659_length_171_cov_1.680328_g40188_i0 PRJNA505329 40659 171 1.680328 2.87336088 Candidatus Nitrospira kreftii 2652173 Bacteria Bacteria 167 4.9e-37   NTclustered gi|1884724763|gb|CP047423.1| 2652173 g40188 i0 85.897 0.912280701754386 156 22 91 0 11 166 1218784 1218629 Candidatus Nitrospira kreftii isolate comreactor17 chromosome, complete genome blastn 156 167 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Candidatus Nitrospira kreftii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;