RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA505329" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA505329 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3034297 3034297 PRJNA505329_P_NODE_15623_length_233_cov_2.581522_g15152_i0 PRJNA505329 15623 233 2.581522 6.01494626 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 148 2.5899999999999997e-31   NTclustered gi|2076452338|gb|CP075364.1| 2682144 g15152 i0 93.939 184.708154506438 99 4 42 2 4 101 667394 667491 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM1 chromosome blastn 43037 148 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
21512121 21512121 PRJNA505329_P_NODE_10877_length_233_cov_3.777174_g10406_i0 PRJNA505329 10877 233 3.777174 8.80081542 Fimbriimonas 1005038 Bacteria Bacteria 171 5.519999999999999e-38   NTclustered gi|663071213|gb|CP007139.1| 661478 g10406 i0 97.03 16.9399141630901 101 3 85 0 133 233 27735 27635 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 3947 172 0.994186046511628 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;