RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA505329" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 13 ✖

bioproject 1

  • PRJNA505329 · 13 ✖

analysis 1

  • blastn · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3034467 3034467 PRJNA505329_P_NODE_29623_length_188_cov_1.453237_g29152_i0 PRJNA505329 29623 188 1.453237 2.73208556 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 337 3.97e-88   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g29152 i0 100 95.3617021276596 182 0 97 0 4 185 1198 1017 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 17928 337 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
6861338 6861338 PRJNA505329_P_NODE_4366_length_383_cov_16.877246_g3901_i0 PRJNA505329 4366 383 16.877246 64.63985218 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 538 2.3e-148   NTclustered gi|300078498|gb|GU001160.1| 5755 g3901 i0 92.506 16.266318537859 387 12 99 15 1 382 5466 5840 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6230 538 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8763304 8763304 PRJNA505329_P_NODE_28127_length_190_cov_1.460993_g27656_i0 PRJNA505329 28127 190 1.460993 2.7758867 Physaraceae 1115744 Evosea other_Eukaryota 316 5.24e-82   NTclustered gi|512391241|gb|KC759091.1| 1346252 g27656 i0 97.826 93.7894736842105 184 2 96 2 9 190 184 367 Badhamia melanospora strain FRA28952MM small subunit ribosomal RNA gene, partial sequence blastn 17820 316 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Badhamia Badhamia melanospora
10038739 10038739 PRJNA505329_P_NODE_17848_length_216_cov_3.305389_g17377_i0 PRJNA505329 17848 216 3.305389 7.13964024 Acanthamoeba 5754 Discosea other_Eukaryota 385 1.65e-102   NTclustered gi|567773270|gb|KF881889.1| 5755 g17377 i0 99.065 98.625 214 2 99 0 3 216 39 252 Acanthamoeba castellanii strain sm-D 18S ribosomal RNA gene, partial sequence blastn 21303 385 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11962144 11962144 PRJNA505329_P_NODE_2950_length_530_cov_6.016632_g2513_i0 PRJNA505329 2950 530 6.016632 31.8881496 Ptolemeba bulliensis 1525729 Tubulinea other_Eukaryota 833 0   NTclustered gi|1255287465|dbj|LC272073.1| 1525729 g2513 i0 95.611 78.8679245283019 524 16 99 6 4 527 1192 676 Ptolemeba bulliensis gene for 18S ribosomal RNA, partial sequence, strain: BA02 blastn 41800 833 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Ptolemeba Ptolemeba bulliensis
12589366 12589366 PRJNA505329_P_NODE_49250_length_162_cov_3.212389_g48779_i0 PRJNA505329 49250 162 3.212389 5.20407018 Physariida 5789 Evosea other_Eukaryota 292 7.3e-75   NTclustered gi|2270227767|gb|ON973803.1| 159720 g48779 i0 100 33.4135802469136 158 0 98 0 4 161 123 280 Fuligo septica isolate NJ2-2 small subunit ribosomal RNA gene, partial sequence blastn 5413 292 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
18335153 18335153 PRJNA505329_P_NODE_40135_length_171_cov_7.204918_g39664_i0 PRJNA505329 40135 171 7.204918 12.32040978 Acanthamoeba sp. 5756 Discosea other_Eukaryota 300 4.63e-77   NTclustered gi|2044079922|gb|MZ272115.1| 5756 g39664 i0 98.81 98.4035087719298 168 2 98 0 4 171 1832 1999 Acanthamoeba sp. isolate AcW138 small subunit ribosomal RNA gene, partial sequence blastn 16827 300 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
20885415 20885415 PRJNA505329_P_NODE_2917_length_534_cov_6.626804_g2483_i0 PRJNA505329 2917 534 6.626804 35.38713336 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 446 2.06e-120   NTclustered gi|300078498|gb|GU001160.1| 5755 g2483 i0 92 15.4868913857678 325 15 96 9 215 531 6443 6122 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8270 446 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22160154 22160154 PRJNA505329_P_NODE_37658_length_175_cov_3.238095_g37187_i0 PRJNA505329 37658 175 3.238095 5.66666625 Vannella septentrionalis 197531 Discosea other_Eukaryota 289 1.0299999999999998e-73   NTclustered gi|300078499|gb|GU001161.1| 197531 g37187 i0 96.552 13.1142857142857 174 6 99 0 1 174 3134 2961 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 2295 289 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
22787439 22787439 PRJNA505329_P_NODE_4558_length_370_cov_6.981308_g4092_i0 PRJNA505329 4558 370 6.981308 25.8308396 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 671 0   NTclustered gi|909719646|gb|KT185626.1| 5755 g4092 i0 100 58.9783783783784 363 0 98 0 4 366 3576 3938 Acanthamoeba castellanii 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 21822 671 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22787501 22787501 PRJNA505329_P_NODE_7118_length_274_cov_24.684444_g6647_i0 PRJNA505329 7118 274 24.684444 67.63537656 Acanthamoeba 5754 Discosea other_Eukaryota 501 2.08e-137   NTclustered gi|507401|gb|U07405.1|ACU07405 5755 g6647 i0 100 98.9671532846715 271 0 99 0 1 271 975 705 Acanthamoeba castellanii CDC:0180:1 18S rRNA gene blastn 27117 501 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23435930 23435930 PRJNA505329_P_NODE_4019_length_410_cov_10.060942_g3554_i0 PRJNA505329 4019 410 10.060942 41.2498622 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 625 1.8499999999999998e-174   NTclustered gi|300078498|gb|GU001160.1| 5755 g3554 i0 94.763 35.0609756097561 401 14 98 6 10 409 7831 7437 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14375 625 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23435935 23435935 PRJNA505329_P_NODE_4059_length_406_cov_8.025210_g3594_i0 PRJNA505329 4059 406 8.02521 32.5823526 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 632 1.0899999999999998e-176   NTclustered gi|300078498|gb|GU001160.1| 5755 g3594 i0 95.214 35.3965517241379 397 16 98 2 2 397 7437 7831 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14371 632 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;