contig_metadata
10 rows where analysis = "blastn", bioproject = "PRJNA498309" and tax_phylum = "Verrucomicrobiota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 482333 | 482333 | PRJNA498309_S_NODE_39241_length_217_cov_402.401099_g37073_i0 | PRJNA498309 | 39241 | 217 | 402.401099 | 873.21038483 | Verrucomicrobiota bacterium | 2026799 | Bacteria | Bacteria | 178 | 3.03e-40 | NTclustered | gi|2916415364|gb|CP170459.1| | 2026799 | g37073 | i0 | 85.227 | 26.3778801843318 | 176 | 22 | 80 | 4 | 13 | 186 | 2576966 | 2577139 | MAG: Verrucomicrobiota bacterium isolate tig00002468 chromosome, complete genome | blastn | 5724 | 178 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium | |||||
| 4309243 | 4309243 | PRJNA498309_S_NODE_3924_length_1562_cov_16.523248_g2725_i0 | PRJNA498309 | 3924 | 1562 | 16.523248 | 258.09313376 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 1059 | 0 | NTclustered | gi|2874254065|emb|OY970130.1| | 412056 | g2725 | i0 | 79.315 | 97.8085787451985 | 1547 | 292 | 98 | 27 | 23 | 1553 | 4130601 | 4129067 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 | blastn | 152777 | 1059 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 9408895 | 9408895 | PRJNA498309_P_NODE_48128_length_387_cov_1.934286_g45992_i0 | PRJNA498309 | 48128 | 387 | 1.934286 | 7.48568682 | Verrucomicrobium spinosum | 2736 | Bacteria | Bacteria | 322 | 2.55e-83 | NTclustered | gi|12583973|gb|AF245377.1| | 240016 | g45992 | i0 | 83.286 | 159.103359173127 | 353 | 56 | 91 | 3 | 35 | 387 | 1449 | 1100 | Verrucomicrobium spinosum 23S ribosomal RNA gene, partial sequence | blastn | 61573 | 322 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Verrucomicrobium | Verrucomicrobium spinosum | |
| 10684141 | 10684141 | PRJNA498309_P_NODE_26689_length_555_cov_10.922780_g24731_i0 | PRJNA498309 | 26689 | 555 | 10.92278 | 60.621429 | Sulfuriroseicoccus oceanibius | 2707525 | Bacteria | Bacteria | 532 | 1.5999999999999993e-146 | NTclustered | gi|1953472588|gb|CP066776.1| | 2707525 | g24731 | i0 | 85.799 | 254.897297297297 | 507 | 66 | 91 | 6 | 22 | 525 | 631700 | 632203 | Sulfuriroseicoccus oceanibius strain T37 chromosome, complete genome | blastn | 141468 | 532 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Sulfuriroseicoccus | Sulfuriroseicoccus oceanibius | |
| 13236433 | 13236433 | PRJNA498309_S_NODE_5231_length_1274_cov_9.265537_g2192_i1 | PRJNA498309 | 5231 | 1274 | 9.265537 | 118.04294138 | Luteolibacter sp. SL250 | 2995170 | Bacteria | Bacteria | 2113 | 0 | NTclustered | gi|2381117106|gb|CP113054.1| | 2995170 | g2192 | i1 | 96.708 | 293.061224489796 | 1276 | 30 | 100 | 11 | 1 | 1274 | 1224 | 2489 | Luteolibacter sp. SL250 chromosome | blastn | 373360 | 2113 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter sp. SL250 | |
| 14509666 | 14509666 | PRJNA498309_P_NODE_48932_length_382_cov_4.414493_g46794_i0 | PRJNA498309 | 48932 | 382 | 4.414493 | 16.86336326 | Luteolibacter sp. SL250 | 2995170 | Bacteria | Bacteria | 606 | 6.199999999999998e-169 | NTclustered | gi|2381117106|gb|CP113054.1| | 2995170 | g46794 | i0 | 97.222 | 269.780104712042 | 360 | 7 | 94 | 2 | 23 | 382 | 2506 | 2150 | Luteolibacter sp. SL250 chromosome | blastn | 103056 | 606 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter sp. SL250 | |
| 18961125 | 18961125 | PRJNA498309_S_NODE_25715_length_358_cov_3.944272_g23547_i0 | PRJNA498309 | 25715 | 358 | 3.9442719999999998 | 14.12049376 | Verrucomicrobiaceae | 203557 | Bacteria | Bacteria | 318 | 3.03e-82 | NTclustered | gi|1953472588|gb|CP066776.1| | 2707525 | g23547 | i0 | 85.806 | 121.329608938547 | 310 | 32 | 86 | 8 | 29 | 332 | 631147 | 631450 | Sulfuriroseicoccus oceanibius strain T37 chromosome, complete genome | blastn | 43436 | 320 | 0.99375 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Sulfuriroseicoccus | Sulfuriroseicoccus oceanibius | |
| 19608659 | 19608659 | PRJNA498309_S_NODE_7676_length_973_cov_67.288913_g2192_i2 | PRJNA498309 | 7676 | 973 | 67.288913 | 654.72112349 | Luteolibacter sp. SL250 | 2995170 | Bacteria | Bacteria | 1062 | 0 | NTclustered | gi|2381117106|gb|CP113054.1| | 2995170 | g2192 | i2 | 87.866 | 191.230215827338 | 923 | 89 | 94 | 20 | 1 | 916 | 2489 | 1583 | Luteolibacter sp. SL250 chromosome | blastn | 186067 | 1062 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter sp. SL250 | |
| 20884467 | 20884467 | PRJNA498309_S_NODE_43677_length_192_cov_16.031847_g41509_i0 | PRJNA498309 | 43677 | 192 | 16.031847 | 30.781146240000002 | Luteolibacter sp. LG18 | 2819286 | Bacteria | Bacteria | 261 | 2.52e-65 | NTclustered | gi|2585939279|dbj|AP024600.1| | 2819286 | g41509 | i0 | 91.146 | 247.723958333333 | 192 | 17 | 100 | 0 | 1 | 192 | 2216692 | 2216883 | Luteolibacter sp. LG18 DNA, complete genome | blastn | 47563 | 261 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter sp. LG18 | |
| 23434772 | 23434772 | PRJNA498309_S_NODE_37759_length_228_cov_2.015544_g35591_i0 | PRJNA498309 | 37759 | 228 | 2.015544 | 4.59544032 | uncultured Verrucomicrobiaceae bacterium | 257470 | Bacteria | Bacteria | 327 | 3.02e-85 | NTclustered | gi|672229328|emb|HE860821.1| | 257470 | g35591 | i0 | 97.895 | 76.8684210526316 | 190 | 3 | 83 | 1 | 24 | 213 | 29 | 217 | Uncultured Verrucomicrobiaceae bacterium partial 16S rRNA gene, clone2A_22 | blastn | 17526 | 327 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | uncultured Verrucomicrobiaceae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;