RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA498309" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA498309 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4308089 4308089 PRJNA498309_P_NODE_72024_length_278_cov_2.331950_g69875_i0 PRJNA498309 72024 278 2.33195 6.482821 Treponema socranskii 53419 Bacteria Bacteria 514 2.7199999999999996e-141   NTclustered gi|2265187740|gb|CP054258.1| 69713 g69875 i0 100 1 278 0 100 0 1 278 416539 416262 Treponema socranskii subsp. buccale strain ATCC 35534 chromosome, complete genome blastn 278 514 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema socranskii
10685131 10685131 PRJNA498309_P_NODE_83709_length_238_cov_10.502488_g81560_i0 PRJNA498309 83709 238 10.502488 24.99592144 Treponema denticola 158 Bacteria Bacteria 233 7.11e-57   NTclustered gi|2277007739|gb|CP038800.1| 158 g81560 i0 86.512 104.05462184874 215 26 90 2 1 215 2757831 2758042 Treponema denticola strain ATCC 700768 chromosome, complete genome blastn 24765 233 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola
17058634 17058634 PRJNA498309_P_NODE_7474_length_1144_cov_2.821138_g6205_i0 PRJNA498309 7474 1144 2.821138 32.27381872 Leptospira sp. severe_002 2838237 Bacteria Bacteria 750 0   NTclustered gi|2120242214|gb|CP075692.1| 2838237 g6205 i0 79.525 80.1486013986014 1094 193 94 25 23 1096 18794 17712 Leptospira sp. severe_002 chromosome 1 blastn 91690 750 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira sp. severe_002

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;