RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA498309" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA498309 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14509585 14509585 PRJNA498309_P_NODE_4452_length_1599_cov_7.362996_g3468_i0 PRJNA498309 4452 1599 7.362996 117.73430604 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 647 1.6499999999999993e-180   NTclustered gi|2314715370|dbj|AP024673.1| 2682145 g3468 i0 82.307 30.2357723577236 763 119 47 13 807 1562 2589041 2589794 MAG: Fimbriimonadales bacterium KatS3mg018 DNA, complete genome blastn 48347 647 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
17686533 17686533 PRJNA498309_P_NODE_34314_length_480_cov_6.720090_g32273_i0 PRJNA498309 34314 480 6.72009 32.256432 Fimbriimonas 1005038 Bacteria Bacteria 544 6.33e-150   NTclustered gi|663071213|gb|CP007139.1| 661478 g32273 i0 89.066 128.18125 439 46 91 2 23 460 29166 28729 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 61527 544 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;