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contig_metadata

22 rows where analysis = "blastn", bioproject = "PRJNA498309" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 22 ✖

bioproject 1

  • PRJNA498309 · 22 ✖

analysis 1

  • blastn · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1109654 1109654 PRJNA498309_S_NODE_39441_length_216_cov_12.232044_g37273_i0 PRJNA498309 39441 216 12.232044 26.42121504 Eukaryota 2759 Plants Plants 377 2.77e-100   NTclustered gi|359385338|emb|FR865755.1| 173490 g37273 i0 98.148 100.208333333333 216 4 100 0 1 216 2585 2370 Pseudendocloniopsis botryoides genomic DNA containing 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, culture collection CCAP 465/1 blastn 21645 377 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Planophilaceae Planophila Planophila laetevirens
4937833 4937833 PRJNA498309_S_NODE_31984_length_278_cov_541.502058_g29816_i0 PRJNA498309 31984 278 541.502058 1505.37572124 Trebouxia 13786 Plants Plants 394 3.69e-105   NTclustered gi|94448778|emb|AJ969606.1| 285713 g29816 i0 99.091 78.7913669064748 220 1 79 1 31 250 1126 1344 Uncultured Trebouxia photobiont 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 26S rRNA gene (partial), isolate L-337 blastn 21904 394 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
4937979 4937979 PRJNA498309_S_NODE_48844_length_170_cov_2.081481_g46676_i0 PRJNA498309 48844 170 2.081481 3.5385177 Haematococcus 44744 Plants Plants 213 6.16e-51   NTclustered gi|66864272|gb|DQ015727.1| 44745 g46676 i0 93.151 85.7411764705882 146 8 86 1 1 146 1397 1540 Haematococcus lacustris strain UTEX 16 26S ribosomal RNA gene, partial sequence blastn 14576 213 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
5583887 5583887 PRJNA498309_P_NODE_13845_length_796_cov_12.404480_g12241_i0 PRJNA498309 13845 796 12.40448 98.7396608 Trebouxia sp. SL0000003 3350044 Plants Plants 298 9.3e-76   NTclustered gi|2917929619|emb|OZ234907.1| 3350044 g12241 i0 93.103 0.255025125628141 203 14 26 0 231 433 56957 57159 Trebouxia sp. SL0000003 genome assembly, chromosome: 2 blastn 203 298 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
6859989 6859989 PRJNA498309_S_NODE_33386_length_264_cov_10.096070_g31218_i0 PRJNA498309 33386 264 10.09607 26.6536248 Monoraphidium neglectum 145388 Plants Plants 100 8.49e-17   NTclustered gi|926774393|ref|XM_014040217.1| 145388 g31218 i0 83.186 0.428030303030303 113 15 42 3 124 234 249 139 Monoraphidium neglectum 40S ribosomal protein S25-3 mRNA blastn 113 100 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
7487071 7487071 PRJNA498309_P_NODE_59006_length_332_cov_2.969492_g56858_i0 PRJNA498309 59006 332 2.969492 9.85871344 Chloroidium 1034479 Plants Plants 540 5.48e-149   NTclustered gi|2174923405|emb|LR998451.1| 3082 g56858 i0 96.084 100 332 12 100 1 1 332 10 340 Chloroidium saccharophilum partial 18S rRNA gene, isolate EW OTU7331_S18, clone M01452:264:000000000-D5YNG:1:1102:12556:10848 blastn 33200 540 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium saccharophilum
10683788 10683788 PRJNA498309_P_NODE_115969_length_161_cov_31.443548_g113820_i0 PRJNA498309 115969 161 31.443548 50.62411228 Prasiolopsis sp. SAG 84.81 3239232 Plants Plants 243 7.39e-60   NTclustered gi|698347906|gb|KM462862.1| 1562155 g113820 i0 93.789 124.627329192547 161 10 100 0 1 161 1656 1816 Prasiolopsis sp. SAG 84.81 chloroplast, complete genome blastn 20065 243 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Prasiolaceae Prasiolopsis Prasiolopsis sp. SAG 84.81
11312687 11312687 PRJNA498309_S_NODE_24949_length_369_cov_308.215569_g22781_i0 PRJNA498309 24949 369 308.215569 1137.31544961 Eukaryota 2759 Plants Plants 665 0   NTclustered gi|1714003650|gb|MN243923.1| 3079 g22781 i0 99.187 99.7967479674797 369 3 100 0 1 369 866 498 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 36825 665 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
13233848 13233848 PRJNA498309_P_NODE_104731_length_183_cov_3.321918_g102582_i0 PRJNA498309 104731 183 3.321918 6.07910994 Tetraspora sp. UTEX-LB 234 106201 Plants Plants 272 1.1e-68   NTclustered gi|15281674|gb|AF395514.1| 106201 g102582 i0 94.413 98.8087431693989 179 6 96 4 1 176 2031 1854 Tetraspora sp. UTEX-LB 234 strain UTEX LB 234 26S ribosomal RNA gene, partial sequence blastn 18082 272 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Tetrasporales Tetrasporaceae Tetraspora Tetraspora sp. UTEX-LB 234
13862857 13862857 PRJNA498309_P_NODE_79471_length_252_cov_2.474419_g77322_i0 PRJNA498309 79471 252 2.474419 6.23553588 Chloroidium 1034479 Plants Plants 409 1.18e-109   NTclustered gi|1802907788|gb|MT006209.1| 2704674 g77322 i0 98.701 88.9404761904762 231 2 91 1 1 230 4268 4038 Chloroidium sp. FACHB-2420 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22413 409 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. FACHB-2420
14509978 14509978 PRJNA498309_P_NODE_66672_length_298_cov_25.701149_g64524_i0 PRJNA498309 66672 298 25.701149 76.58942402 Stichococcus bacillaris 37433 Plants Plants 414 3.07e-111   NTclustered gi|356468228|gb|JN168789.1| 37433 g64524 i0 94.737 97.3624161073825 266 14 89 0 5 270 601 336 Stichococcus bacillaris strain siva2011 23S ribosomal RNA gene, partial sequence; chloroplast blastn 29014 414 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
15137319 15137319 PRJNA498309_P_NODE_95452_length_205_cov_2.309524_g93303_i0 PRJNA498309 95452 205 2.309524 4.7345242 Eukaryota 2759 Plants Plants 357 3.3899999999999996e-94   NTclustered gi|359385338|emb|FR865755.1| 173490 g93303 i0 98.049 100.19512195122 205 4 100 0 1 205 2381 2585 Pseudendocloniopsis botryoides genomic DNA containing 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, culture collection CCAP 465/1 blastn 20540 357 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Planophilaceae Planophila Planophila laetevirens
15782699 15782699 PRJNA498309_P_NODE_109053_length_174_cov_7.416058_g106904_i0 PRJNA498309 109053 174 7.416058 12.90394092 Koliella longiseta 33092 Plants Plants 134 5.08e-27   NTclustered gi|746948124|ref|NC_025531.1| 33092 g106904 i0 86.29 23.6724137931034 124 15 71 2 1 123 62472 62594 Koliella longiseta culture-collection UTEX:339 chloroplast, complete genome blastn 4119 134 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
15784872 15784872 PRJNA498309_S_NODE_30533_length_294_cov_23.420849_g28365_i0 PRJNA498309 30533 294 23.420849 68.85729606 Ixipapillifera deasonii 2069336 Plants Plants 244 4.1899999999999996e-60   NTclustered gi|1375380783|dbj|LC360482.1| 2069336 g28365 i0 82.909 4.38095238095238 275 43 93 4 23 294 1463 1736 Ixipapillifera deasonii SAG 46.72 gene for 26S ribosomal RNA, partial sequence blastn 1288 244 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Ixipapillifera Ixipapillifera deasonii
16412351 16412351 PRJNA498309_S_NODE_40833_length_208_cov_2.092486_g38665_i0 PRJNA498309 40833 208 2.092486 4.35237088 Chloroidium 1034479 Plants Plants 337 4.49e-88   NTclustered gi|1021681228|gb|KX024689.1| 3082 g38665 i0 99.462 86.9519230769231 186 0 89 1 24 208 2888 3073 Chloroidium saccharophilum strain FACHB-1796 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18086 337 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium saccharophilum
17058806 17058806 PRJNA498309_P_NODE_86294_length_231_cov_1.381443_g84145_i0 PRJNA498309 86294 231 1.381443 3.19113333 Chlorella variabilis 554065 Plants Plants 78.7 3.41e-10   NTclustered gi|552827099|ref|XM_005847108.1| 554065 g84145 i0 95.833 0.207792207792208 48 2 21 0 1 48 791 838 Chlorella variabilis hypothetical protein (CHLNCDRAFT_23906) mRNA, complete cds blastn 48 78.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
19607459 19607459 PRJNA498309_P_NODE_89836_length_220_cov_2.874317_g87687_i0 PRJNA498309 89836 220 2.874317 6.3234974 Monoraphidium neglectum 145388 Plants Plants 100 6.86e-17   NTclustered gi|926774393|ref|XM_014040217.1| 145388 g87687 i0 83.186 0.513636363636364 113 15 50 3 87 197 249 139 Monoraphidium neglectum 40S ribosomal protein S25-3 mRNA blastn 113 100 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
22159009 22159009 PRJNA498309_S_NODE_37938_length_226_cov_6.251309_g35770_i0 PRJNA498309 37938 226 6.251309 14.12795834 Trebouxia aggregata 160068 Plants Plants 244 3.0899999999999997e-60   NTclustered gi|162134245|gb|EU123948.1| 160068 g35770 i0 90.71 6.79203539823009 183 17 81 0 26 208 5200 5382 Trebouxia aggregata strain SAG 219-1d ribosomal protein S2 (rps2) gene, complete cds; tRNA-Met (trnMe(cau)) and large subunit ribosomal RNA (rnl) genes, complete sequence; putative site-specific DNA endonuclease (orf365) gene, complete cds; small subunit ribosomal RNA (rns) and tRNA-Met (trnMf(cau)) genes, complete sequence; cytochrome c oxidase subunit 1 (cox1), putative site-specific DNA endonuclease (orf335), and putative site-specific DNA endonuclease (orf256) genes, complete cds; tRNA-Phe (trnF(gaa)) and tRNA-Lys (trnK(uuu)) genes, complete sequence; and apocytochrome b (cob) and putative site-specific DNA endonuclease (orf334) genes, complete cds; mitochondrial blastn 1535 244 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
22785565 22785565 PRJNA498309_P_NODE_12538_length_842_cov_11.370186_g10993_i0 PRJNA498309 12538 842 11.370186 95.73696612 Trebouxiophyceae 75966 Plants Plants 418 7.249999999999998e-112   NTclustered gi|371782094|emb|HE610126.1| 33092 g10993 i0 86.772 73.4275534441805 378 47 83 3 241 616 4399 4775 Koliella longiseta 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 470-1 blastn 61826 422 0.990521327014218 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
22786666 22786666 PRJNA498309_S_NODE_37678_length_228_cov_9.906736_g35510_i0 PRJNA498309 37678 228 9.906736 22.58735808 Chlorophyta 3041 Plants Plants 422 1.34e-113   NTclustered gi|345425754|gb|JN573875.1| 1077721 g35510 i0 100 99.8114035087719 228 0 100 0 1 228 77 304 Dilabifilum sp. W1017 18S ribosomal RNA gene, partial sequence blastn 22757 422 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetophorales Chaetophoraceae Dilabifilum Dilabifilum sp. W1017
24706977 24706977 PRJNA498309_P_NODE_59200_length_331_cov_3.666667_g57052_i0 PRJNA498309 59200 331 3.666667 12.13666777 Chlamydomonas reinhardtii 3055 Plants Plants 56.5 0.002   NTclustered gi|2509912724|gb|OQ076544.1| 3055 g57052 i0 100 0.268882175226586 30 0 9 0 212 241 2042 2013 Chlamydomonas reinhardtii isolate CC425 copper amine oxidase (amx1) mRNA, complete cds blastn 89 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
25334992 25334992 PRJNA498309_P_NODE_24620_length_581_cov_12.376838_g22696_i0 PRJNA498309 24620 581 12.376838 71.90942878 Trebouxiophyceae 75966 Plants Plants 431 6.31e-116   NTclustered gi|371782094|emb|HE610126.1| 33092 g22696 i0 89.504 94.6127366609294 343 33 94 3 241 581 4399 4740 Koliella longiseta 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 470-1 blastn 54970 435 0.990804597701149 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;