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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA498309" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJNA498309 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
482711 482711 PRJNA498309_S_NODE_9841_length_812_cov_15.500644_g8096_i0 PRJNA498309 9841 812 15.500644 125.86522928 Acytostelium leptosomum 133408 Evosea other_Eukaryota 1225 0   NTclustered gi|1057487862|gb|KX539491.1| 133408 g8096 i0 94.472 98.1945812807882 796 42 98 2 18 812 1031 1825 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 79734 1225 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
5585708 5585708 PRJNA498309_S_NODE_24065_length_383_cov_13.681034_g21901_i0 PRJNA498309 24065 383 13.681034 52.39836022 Arcyria cinerea 137621 Evosea other_Eukaryota 117 1.28e-21   NTclustered gi|2753773268|gb|PP982846.1| 137621 g21901 i0 73.713 13.8041775456919 369 68 93 24 1 355 2589 2236 Arcyria cinerea voucher MEL2416382 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 5287 117 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria cinerea
6858705 6858705 PRJNA498309_P_NODE_58246_length_335_cov_5.697987_g56098_i0 PRJNA498309 58246 335 5.697987 19.08825645 Acytostelium leptosomum 133408 Evosea other_Eukaryota 512 1.21e-140   NTclustered gi|1057487862|gb|KX539491.1| 133408 g56098 i0 97.351 85.9641791044776 302 7 90 1 4 304 97 398 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 28798 512 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
6859550 6859550 PRJNA498309_S_NODE_16826_length_535_cov_2.936000_g14805_i0 PRJNA498309 16826 535 2.936 15.7076 Acytostelium leptosomum 133408 Evosea other_Eukaryota 737 0   NTclustered gi|1057487862|gb|KX539491.1| 133408 g14805 i0 93.548 2.09345794392523 496 31 93 1 17 511 3313 3808 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 1120 737 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
8134357 8134357 PRJNA498309_P_NODE_73427_length_273_cov_2.224576_g71278_i0 PRJNA498309 73427 273 2.224576 6.07309248 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 209 1.41e-49   NTclustered gi|300078498|gb|GU001160.1| 5755 g71278 i0 80.887 16.5934065934066 293 33 99 16 1 271 6465 6174 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4530 209 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9410278 9410278 PRJNA498309_S_NODE_30388_length_296_cov_5.000000_g28220_i0 PRJNA498309 30388 296 5 14.8 Licea marginata 1334548 Evosea other_Eukaryota 154 7.32e-33   NTclustered gi|501417082|gb|JX481296.1| 1334548 g28220 i0 87.786 39.4087837837838 131 16 44 0 23 153 495 365 Licea marginata voucher DWM7368 18S ribosomal RNA gene, partial sequence blastn 11665 154 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Liceales Liceaceae Licea Licea marginata
11958836 11958836 PRJNA498309_P_NODE_110430_length_172_cov_1.414815_g108281_i0 PRJNA498309 110430 172 1.414815 2.4334818 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 261 2.2000000000000002e-65   NTclustered gi|2651357789|gb|PP174304.1| 1892891 g108281 i0 99.306 79.1453488372093 144 1 84 0 29 172 3443 3300 Amoebozoa sp. isolate 114_WLI small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13613 261 1 Eukaryota Amoebozoa             Amoebozoa sp.
11961483 11961483 PRJNA498309_S_NODE_8250_length_922_cov_10.837655_g6610_i0 PRJNA498309 8250 922 10.837655 99.9231791 Acytostelium leptosomum 133408 Evosea other_Eukaryota 1330 0   NTclustered gi|1057487862|gb|KX539491.1| 133408 g6610 i0 93.459 100.375271149675 902 49 98 7 1 900 1773 2666 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 92546 1330 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
15783621 15783621 PRJNA498309_P_NODE_54473_length_353_cov_4.756329_g52325_i0 PRJNA498309 54473 353 4.756329 16.78984137 Didymium iridis 5793 Evosea other_Eukaryota 351 2.94e-92   NTclustered gi|2687|emb|X60210.1| 5793 g52325 i0 86.687 1.13031161473088 323 35 90 8 17 332 5541 5220 D.iridis LSU rRNA gene blastn 399 351 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
20884194 20884194 PRJNA498309_S_NODE_29857_length_302_cov_13.314607_g27689_i0 PRJNA498309 29857 302 13.314607 40.21011314 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 187 7.39e-43   NTclustered gi|145386790|gb|EF216915.1| 180228 g27689 i0 78.846 65.364238410596 312 41 100 20 1 302 333 37 Paramoeba pemaquidensis strain PA027 28S large subunit ribosomal RNA gene, partial sequence blastn 19740 187 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
20884401 20884401 PRJNA498309_S_NODE_39917_length_214_cov_1.486034_g37749_i0 PRJNA498309 39917 214 1.486034 3.18011276 Macbrideola oblonga 410620 Evosea other_Eukaryota 167 6.449999999999999e-37   NTclustered gi|118577476|gb|DQ903682.1| 410620 g37749 i0 91.057 58.2570093457944 123 11 57 0 92 214 1537 1659 Macbrideola oblonga voucher M. Schnittler small subunit ribosomal RNA gene, partial sequence blastn 12467 167 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida   Macbrideola Macbrideola oblonga
23432516 23432516 PRJNA498309_P_NODE_112419_length_168_cov_1.740458_g110270_i0 PRJNA498309 112419 168 1.740458 2.92396944 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 283 4.6e-72   NTclustered gi|2651357789|gb|PP174304.1| 1892891 g110270 i0 97.024 9.52976190476191 168 5 100 0 1 168 3851 4018 Amoebozoa sp. isolate 114_WLI small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1601 283 1 Eukaryota Amoebozoa             Amoebozoa sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;