RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA495917" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA495917 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4304418 4304418 PRJNA495917_S_NODE_4964_length_226_cov_1.544503_g4770_i0 PRJNA495917 4964 226 1.544503 3.49057678 Canis lupus 9612 Chordata Chordata 353 4.92e-93   NTclustered gi|125658997|gb|EF377413.1| 9615 g4770 i0 95.89 43.3274336283186 219 8 96 1 1 218 125 343 Canis familiaris clone CSac26 satellite sequence blastn 9792 353 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
5581146 5581146 PRJNA495917_S_NODE_765_length_532_cov_4.555332_g588_i0 PRJNA495917 765 532 4.555332 24.23436624 Mus musculus 10090 Chordata Chordata 311 7.800000000000001e-80   NTclustered gi|2904935057|gb|PQ737980.1| 10090 g588 i0 81.989 6.20864661654135 372 61 69 6 2 370 16 384 Mus musculus lncRNA390 lncRNA, complete sequence blastn 3303 311 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
8760891 8760891 PRJNA495917_S_NODE_2127_length_334_cov_34.377926_g1933_i0 PRJNA495917 2127 334 34.377926 114.82227284 Cheloniidae 8465 Chordata Chordata 52.8 0.031   NTclustered gi|2911500576|emb|OZ223607.1| 8472 g1933 i0 100 0.251497005988024 28 0 8 0 4 31 10181279 10181252 Lepidochelys kempii isolate rLepKem1 genome assembly, chromosome: 21 blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Lepidochelys Lepidochelys kempii
8760913 8760913 PRJNA495917_S_NODE_5347_length_219_cov_1.739130_g5153_i0 PRJNA495917 5347 219 1.73913 3.8086947 Canis 9611 Chordata Chordata 405 1.29e-108   NTclustered gi|2515404478|gb|OM743359.1| 9612 g5153 i0 100 100 219 0 100 0 1 219 985 1203 Canis lupus isolate A92 mitochondrion, partial genome blastn 21900 405 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
15136003 15136003 PRJNA495917_S_NODE_16492_length_151_cov_1.034483_g16298_i0 PRJNA495917 16492 151 1.034483 1.56206933 root 1 Root_unresolved Root_unresolved 278 1.87e-70   NTclustered gi|1111007589|ref|XM_019472840.1| 9233 g16298 i0 100 1.99337748344371 150 0 99 0 2 151 629 480 PREDICTED: Aptenodytes forsteri sensor protein KdpD-like (LOC109279539), mRNA blastn 301 279 0.996415770609319 Eukaryota Opisthokonta Metazoa Chordata Aves Sphenisciformes Spheniscidae Aptenodytes Aptenodytes forsteri
18959406 18959406 PRJNA495917_S_NODE_10895_length_170_cov_1.777778_g10701_i0 PRJNA495917 10895 170 1.777778 3.0222226 root 1 Root_unresolved Root_unresolved 315 1.64e-81   NTclustered gi|686607936|ref|XM_009282245.1| 9233 g10701 i0 100 2 170 0 100 0 1 170 81 250 PREDICTED: Aptenodytes forsteri KDP operon transcriptional regulatory protein KdpE-like (LOC103901368), partial mRNA blastn 340 315 1 Eukaryota Opisthokonta Metazoa Chordata Aves Sphenisciformes Spheniscidae Aptenodytes Aptenodytes forsteri
19603460 19603460 PRJNA495917_S_NODE_4116_length_244_cov_3.052632_g3922_i0 PRJNA495917 4116 244 3.052632 7.44842208 Cairina moschata 8855 Chordata Chordata 52.8 0.022   NTclustered gi|2921976312|gb|CP130421.1| 8855 g3922 i0 100 0.114754098360656 28 0 11 0 105 132 28827624 28827651 Cairina moschata breed yongchun chromosome 6 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
20879385 20879385 PRJNA495917_S_NODE_4897_length_227_cov_1.718750_g4703_i0 PRJNA495917 4897 227 1.71875 3.9015625 Aptenodytes forsteri 9233 Chordata Chordata 414 2.2399999999999998e-111   NTclustered gi|1111007589|ref|XM_019472840.1| 9233 g4703 i0 99.559 2.12334801762115 227 1 100 0 1 227 2416 2642 PREDICTED: Aptenodytes forsteri sensor protein KdpD-like (LOC109279539), mRNA blastn 482 414 1 Eukaryota Opisthokonta Metazoa Chordata Aves Sphenisciformes Spheniscidae Aptenodytes Aptenodytes forsteri
22785009 22785009 PRJNA495917_S_NODE_16758_length_150_cov_1.391304_g16564_i0 PRJNA495917 16758 150 1.391304 2.086956 Canis 9611 Chordata Chordata 278 1.85e-70   NTclustered gi|1789850055|gb|MK937010.1| 9612 g16564 i0 100 100 150 0 100 0 1 150 13908 13759 Canis lupus isolate cgg27_3x mitochondrion, partial genome blastn 15000 278 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
24059722 24059722 PRJNA495917_S_NODE_10939_length_170_cov_1.481481_g10745_i0 PRJNA495917 10939 170 1.481481 2.5185177 Canis 9611 Chordata Chordata 315 1.64e-81   NTclustered gi|1786483437|gb|MN071185.1| 9612 g10745 i0 100 100 170 0 100 0 1 170 13469 13638 Canis lupus isolate Ms1_Afghan_wolf_CN4498 mitochondrion, partial genome blastn 17000 315 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
25334189 25334189 PRJNA495917_S_NODE_12760_length_162_cov_1.259843_g12566_i0 PRJNA495917 12760 162 1.259843 2.04094566 Canis 9611 Chordata Chordata 300 4.36e-77   NTclustered gi|1789850471|gb|MK937040.1| 9612 g12566 i0 100 100 162 0 100 0 1 162 9695 9856 Canis lupus isolate tu14_3x mitochondrion, partial genome blastn 16200 300 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;