RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA495917" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA495917 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7485924 7485924 PRJNA495917_S_NODE_12706_length_162_cov_1.456693_g12512_i0 PRJNA495917 12706 162 1.456693 2.35984266 Chloroflexota 200795 Bacteria Bacteria 226 7.509999999999998e-55   NTclustered gi|2531976033|emb|OY282371.1| 498747 g12512 i0 92.453 98.4444444444444 159 11 98 1 1 159 2343527 2343684 MAG: uncultured Dehalococcoidia bacterium genome assembly, chromosome: 1 blastn 15948 226 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       uncultured Dehalococcoidia bacterium
17054801 17054801 PRJNA495917_S_NODE_1394_length_399_cov_32.733516_g1200_i0 PRJNA495917 1394 399 32.733516 130.60672884 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 257 7.55e-64   NTclustered gi|2575820385|emb|OY730488.1| 2026734 g1200 i0 78.934 295.917293233083 394 72 97 10 13 399 1464988 1465377 MAG: Dehalococcoidia bacterium isolate c17ab466-9012-4dfd-ba8a-0af8548777ee genome assembly, chromosome: 1 blastn 118071 257 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;