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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA495391" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA495391 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
476965 476965 PRJNA495391_S_NODE_56861_length_165_cov_1.530769_g55809_i0 PRJNA495391 56861 165 1.530769 2.52576885 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 174 2.82e-39   NTclustered gi|301098172|ref|XM_002898134.1| 403677 g55809 i0 100 0.56969696969697 94 0 57 0 72 165 14271 14178 Phytophthora infestans T30-4 dynein heavy chain, outer arm (PITG_15967), partial mRNA blastn 94 174 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
1751167 1751167 PRJNA495391_S_NODE_31042_length_218_cov_1.327869_g29990_i0 PRJNA495391 31042 218 1.327869 2.89475442 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 392 1e-104   NTclustered gi|325195136|emb|FR825930.1| 890382 g29990 i0 99.083 16.4128440366972 218 2 100 0 1 218 228 11 Albugo laibachii Nc14, genomic contig CONTIG_2990_NC14_v4_499_54 blastn 3578 392 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
4935572 4935572 PRJNA495391_S_NODE_41204_length_191_cov_1.961538_g40152_i0 PRJNA495391 41204 191 1.961538 3.74653758 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 148 2.04e-31   NTclustered gi|325180604|emb|FR824053.1| 890382 g40152 i0 88.525 1.27748691099476 122 14 64 0 1 122 118982 118861 Albugo laibachii Nc14, genomic contig CONTIG_8_NC14_v4_238846_215 blastn 244 148 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
7485150 7485150 PRJNA495391_S_NODE_18706_length_277_cov_2.061983_g17654_i0 PRJNA495391 18706 277 2.061983 5.71169291 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 237 6.560000000000001e-58   NTclustered gi|325186025|emb|FR824142.1| 890382 g17654 i0 82.31 4 277 46 99 3 1 276 75792 75518 Albugo laibachii Nc14, genomic contig CONTIG_97_NC14_v4_80307_117 blastn 1108 237 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
11310228 11310228 PRJNA495391_S_NODE_18189_length_281_cov_1.764228_g17137_i0 PRJNA495391 18189 281 1.764228 4.95748068 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 292 1.4e-74   NTclustered gi|325180604|emb|FR824053.1| 890382 g17137 i0 86.245 2.12099644128114 269 37 96 0 1 269 118410 118678 Albugo laibachii Nc14, genomic contig CONTIG_8_NC14_v4_238846_215 blastn 596 292 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
15135422 15135422 PRJNA495391_S_NODE_38412_length_197_cov_2.438272_g37360_i0 PRJNA495391 38412 197 2.438272 4.80339584 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 265 2.0099999999999997e-66   NTclustered gi|325180604|emb|FR824053.1| 890382 g37360 i0 90.863 2.24873096446701 197 18 100 0 1 197 117987 117791 Albugo laibachii Nc14, genomic contig CONTIG_8_NC14_v4_238846_215 blastn 443 265 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
15778622 15778622 PRJNA495391_S_NODE_22373_length_254_cov_1.771689_g21321_i0 PRJNA495391 22373 254 1.771689 4.50009006 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 233 7.669999999999999e-57   NTclustered gi|325194646|emb|FR825458.1| 890382 g21321 i0 86.73 2.29527559055118 211 26 83 2 1 210 262 53 Albugo laibachii Nc14, genomic contig CONTIG_2303_NC14_v4_894_25 blastn 583 233 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
17054285 17054285 PRJNA495391_S_NODE_59114_length_162_cov_1.921260_g58062_i0 PRJNA495391 59114 162 1.92126 3.1124412 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 250 4.45e-62   NTclustered gi|325195057|emb|FR825852.1| 890382 g58062 i0 94.479 83.4814814814815 163 8 100 1 1 162 275 113 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 13524 250 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
18327564 18327564 PRJNA495391_S_NODE_19195_length_273_cov_10.508403_g18143_i0 PRJNA495391 19195 273 10.508403 28.68794019 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 503 5.76e-138   NTclustered gi|380865879|gb|JQ277732.1| 65357 g18143 i0 100 96.9267399267399 272 0 99 0 2 273 1315 1044 Albugo candida strain TT1958 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 26461 503 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;