RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA495391" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA495391 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20233621 20233621 PRJNA495391_S_NODE_26796_length_233_cov_1.782828_g25744_i0 PRJNA495391 26796 233 1.782828 4.15398924 Caenorhabditis 6237 Nematoda Nematoda 115 2.6200000000000003e-21   NTclustered gi|268562264|ref|XM_002638506.1| 6238 g25744 i0 82.09 2.28755364806867 134 24 58 0 98 231 22 155 Caenorhabditis briggsae Protein CBR-RPL-2 (Cbr-rpl-2), partial mRNA blastn 533 115 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
20878372 20878372 PRJNA495391_S_NODE_42117_length_189_cov_1.896104_g41065_i0 PRJNA495391 42117 189 1.896104 3.58363656 Meloidogyne enterolobii 390850 Nematoda Nematoda 117 5.670000000000001e-22   NTclustered gi|559807134|gb|KF534787.1| 390850 g41065 i0 83.74 5.74603174603175 123 20 65 0 67 189 1210 1088 Meloidogyne enterolobii actin mRNA, complete cds blastn 1086 117 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;