RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA495391" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA495391 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13229935 13229935 PRJNA495391_S_NODE_26771_length_233_cov_2.005051_g25719_i0 PRJNA495391 26771 233 2.005051 4.67176883 Chondromyces crocatus 52 Bacteria Bacteria 60.2 1.25e-4   NTclustered gi|908353314|gb|CP012159.1| 52 g25719 i0 100 1.14163090128755 32 0 14 0 101 132 8256473 8256442 Chondromyces crocatus strain Cm c5, complete genome blastn 266 60.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
15778308 15778308 PRJNA495391_S_NODE_10673_length_368_cov_2.378378_g9621_i0 PRJNA495391 10673 368 2.378378 8.75243104 Corallococcus exercitus 2316736 Bacteria Bacteria 54.7 0.01   NTclustered gi|2809270164|gb|CP102577.1| 2316736 g9621 i0 86.275 0.138586956521739 51 5 14 2 107 156 4050343 4050294 Corallococcus exercitus strain SDU142 chromosome, complete genome blastn 51 54.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus exercitus
19602084 19602084 PRJNA495391_S_NODE_28856_length_225_cov_1.863158_g27804_i0 PRJNA495391 28856 225 1.863158 4.1921055 Polyangium aurulentum 2567896 Bacteria Bacteria 62.1 3.32e-5   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g27804 i0 97.222 0.16 36 1 16 0 175 210 9998487 9998522 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 36 62.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;