RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA495391" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA495391 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
476888 476888 PRJNA495391_S_NODE_53741_length_169_cov_2.037313_g52689_i0 PRJNA495391 53741 169 2.037313 3.44305897 Mya arenaria 6604 Mollusca Mollusca 60.2 8.43e-5   NTclustered gi|2427447585|ref|XM_052924905.1| 6604 g52689 i0 100 0.633136094674556 32 0 19 0 24 55 566 597 PREDICTED: Mya arenaria 60S ribosomal protein L18-like (LOC128217635), mRNA blastn 107 60.2 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
14504582 14504582 PRJNA495391_S_NODE_17412_length_287_cov_2.396825_g16360_i0 PRJNA495391 17412 287 2.396825 6.87888775 Dreissena polymorpha 45954 Mollusca Mollusca 69.4 2.64e-7   NTclustered gi|2364394871|ref|XR_008043607.1| 45954 g16360 i0 100 0.226480836236934 37 0 13 0 56 92 462 498 PREDICTED: Dreissena polymorpha uncharacterized LOC127867677 (LOC127867677), ncRNA blastn 65 69.4 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Dreissenidae Dreissena Dreissena polymorpha
14505270 14505270 PRJNA495391_S_NODE_42952_length_187_cov_2.506579_g41900_i0 PRJNA495391 42952 187 2.506579 4.68730273 Mercenaria mercenaria 6596 Mollusca Mollusca 171 4.24e-38   NTclustered gi|2442079979|ref|XM_045300417.2| 6596 g41900 i0 84.091 65.5828877005348 176 28 94 0 12 187 1290 1115 PREDICTED: Mercenaria mercenaria tubulin alpha chain, testis-specific-like (LOC123522907), mRNA blastn 12264 171 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Mercenaria Mercenaria mercenaria
15779117 15779117 PRJNA495391_S_NODE_40033_length_194_cov_1.220126_g38981_i0 PRJNA495391 40033 194 1.220126 2.36704444 Mizuhopecten yessoensis 6573 Mollusca Mollusca 158 3.45e-34   NTclustered gi|1207980043|ref|XM_021483868.1| 6573 g38981 i0 84.049 21.6752577319588 163 26 84 0 3 165 124 286 PREDICTED: Mizuhopecten yessoensis 60S ribosomal protein L10-like (LOC110440716), mRNA blastn 4205 158 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;