RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA495391" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA495391 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8760104 8760104 PRJNA495391_S_NODE_21407_length_259_cov_2.821429_g20355_i0 PRJNA495391 21407 259 2.821429 7.30750111 Opisthokonta 33154 Fungi Fungi 479 9.13e-131   NTclustered gi|19386988|gb|AF450112.1| 109953 g20355 i0 100 99.5598455598456 259 0 100 0 1 259 799 541 Monoblepharis insignis translation elongation factor 1-alpha gene, partial cds blastn 25786 479 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales Monoblepharidaceae Monoblepharis Monoblepharis insignis
9404631 9404631 PRJNA495391_S_NODE_47828_length_178_cov_2.307692_g46776_i0 PRJNA495391 47828 178 2.307692 4.10769176 Polychytrium aggregatum 110093 Fungi Fungi 121 4.0699999999999996e-23   NTclustered gi|2432135199|ref|XM_053109835.1| 110093 g46776 i0 80.625 2.37640449438202 160 27 89 4 19 176 1611 1454 Polychytrium aggregatum formate--tetrahydrofolate ligase-domain-containing protein (BJ171DRAFT_492736), mRNA blastn 423 121 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;