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contig_metadata

29 rows where analysis = "blastn", bioproject = "PRJNA495391" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 29 ✖

bioproject 1

  • PRJNA495391 · 29 ✖

analysis 1

  • blastn · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
475829 475829 PRJNA495391_S_NODE_13681_length_323_cov_2.302083_g12629_i0 PRJNA495391 13681 323 2.302083 7.43572809 Trebouxia sp. SL0000003 3350044 Plants Plants 429 1.1999999999999999e-115   NTclustered gi|2917929619|emb|OZ234907.1| 3350044 g12629 i0 90.578 1.01857585139319 329 24 100 3 1 323 1149728 1150055 Trebouxia sp. SL0000003 genome assembly, chromosome: 2 blastn 329 429 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
477111 477111 PRJNA495391_S_NODE_6321_length_489_cov_2.022026_g5283_i0 PRJNA495391 6321 489 2.022026 9.88770714 Trebouxia sp. SL0000003 3350044 Plants Plants 342 2.53e-89   NTclustered gi|2917929619|emb|OZ234907.1| 3350044 g5283 i0 81.004 71.9775051124744 458 63 92 14 1 452 2515426 2515865 Trebouxia sp. SL0000003 genome assembly, chromosome: 2 blastn 35197 342 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
1750859 1750859 PRJNA495391_S_NODE_19862_length_269_cov_2.594017_g18810_i0 PRJNA495391 19862 269 2.594017 6.97790573 Trebouxia sp. SL0000003 3350044 Plants Plants 111 4.01e-20   NTclustered gi|2917929806|emb|OZ234924.1| 3350044 g18810 i0 98.413 0.234200743494424 63 1 23 0 2 64 496441 496379 Trebouxia sp. SL0000003 genome assembly, chromosome: 19 blastn 63 111 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
1751168 1751168 PRJNA495391_S_NODE_31082_length_217_cov_5.027473_g30030_i0 PRJNA495391 31082 217 5.027473 10.90961641 Trebouxia sp. AM-2020 2735200 Plants Plants 368 1.68e-97   NTclustered gi|1840576545|gb|MT458607.1| 2735200 g30030 i0 97.235 100.027649769585 217 6 100 0 1 217 450 666 Trebouxia sp. AM-2020 isolate Tenerife large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 21706 368 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. AM-2020
1751448 1751448 PRJNA495391_S_NODE_4182_length_620_cov_2.926496_g3175_i0 PRJNA495391 4182 620 2.926496 18.1442752 Trebouxia sp. SL0000003 3350044 Plants Plants 368 5.38e-97   NTclustered gi|2917930139|emb|OZ234925.1| 3350044 g3175 i0 89.153 1.00967741935484 295 32 99 0 325 619 1836028 1836322 Trebouxia sp. SL0000003 genome assembly, chromosome: 20 blastn 626 368 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
1751919 1751919 PRJNA495391_S_NODE_59062_length_162_cov_2.055118_g58010_i0 PRJNA495391 59062 162 2.0551179999999998 3.32929116 Trebouxia aggregata 160068 Plants Plants 176 7.67e-40   NTclustered gi|162134245|gb|EU123948.1| 160068 g58010 i0 98.02 8.79012345679012 101 2 95 0 62 162 10094 10194 Trebouxia aggregata strain SAG 219-1d ribosomal protein S2 (rps2) gene, complete cds; tRNA-Met (trnMe(cau)) and large subunit ribosomal RNA (rnl) genes, complete sequence; putative site-specific DNA endonuclease (orf365) gene, complete cds; small subunit ribosomal RNA (rns) and tRNA-Met (trnMf(cau)) genes, complete sequence; cytochrome c oxidase subunit 1 (cox1), putative site-specific DNA endonuclease (orf335), and putative site-specific DNA endonuclease (orf256) genes, complete cds; tRNA-Phe (trnF(gaa)) and tRNA-Lys (trnK(uuu)) genes, complete sequence; and apocytochrome b (cob) and putative site-specific DNA endonuclease (orf334) genes, complete cds; mitochondrial blastn 1424 176 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
3026928 3026928 PRJNA495391_S_NODE_23143_length_250_cov_1.772093_g22091_i0 PRJNA495391 23143 250 1.772093 4.4302325 Chlorosarcinopsis eremi 332213 Plants Plants 163 1e-35   NTclustered gi|1610617827|ref|NC_041430.1| 332213 g22091 i0 87.857 0.56 140 15 56 2 1 139 4190 4052 Chlorosarcinopsis eremi strain MKA.28 mitochondrion, complete genome blastn 140 163 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlorosarcinales Chlorosarcinaceae Chlorosarcinopsis Chlorosarcinopsis eremi
4302849 4302849 PRJNA495391_S_NODE_21564_length_258_cov_2.717489_g20512_i0 PRJNA495391 21564 258 2.717489 7.01112162 Trebouxia sp. SL0000003 3350044 Plants Plants 148 2.91e-31   NTclustered gi|2917929619|emb|OZ234907.1| 3350044 g20512 i0 92.381 1.51937984496124 105 7 40 1 108 211 3641006 3641110 Trebouxia sp. SL0000003 genome assembly, chromosome: 2 blastn 392 148 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
4303416 4303416 PRJNA495391_S_NODE_42844_length_188_cov_1.045752_g41792_i0 PRJNA495391 42844 188 1.045752 1.96601376 Trebouxia sp. SL0000003 3350044 Plants Plants 152 1.54e-32   NTclustered gi|2917929806|emb|OZ234924.1| 3350044 g41792 i0 95.745 1.29787234042553 94 4 50 0 1 94 472905 472998 Trebouxia sp. SL0000003 genome assembly, chromosome: 19 blastn 244 152 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
5580747 5580747 PRJNA495391_S_NODE_68445_length_152_cov_2.598291_g67393_i0 PRJNA495391 68445 152 2.598291 3.94940232 Trebouxia sp. SL0000003 3350044 Plants Plants 169 1.18e-37   NTclustered gi|2917929625|emb|OZ234913.1| 3350044 g67393 i0 88.028 0.934210526315789 142 17 93 0 6 147 2118879 2119020 Trebouxia sp. SL0000003 genome assembly, chromosome: 8 blastn 142 169 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
8128780 8128780 PRJNA495391_S_NODE_13267_length_328_cov_3.187713_g12215_i0 PRJNA495391 13267 328 3.187713 10.45569864 Trebouxia sp. SL0000003 3350044 Plants Plants 139 2.3000000000000003e-28   NTclustered gi|2917929621|emb|OZ234909.1| 3350044 g12215 i0 93.548 0.564024390243902 93 6 56 0 229 321 1354698 1354790 Trebouxia sp. SL0000003 genome assembly, chromosome: 4 blastn 185 139 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
8129109 8129109 PRJNA495391_S_NODE_25327_length_239_cov_2.666667_g24275_i0 PRJNA495391 25327 239 2.666667 6.37333413 Koliella longiseta 33092 Plants Plants 309 1.15e-79   NTclustered gi|371782094|emb|HE610126.1| 33092 g24275 i0 89.958 100.928870292887 239 24 100 0 1 239 4692 4930 Koliella longiseta 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 470-1 blastn 24122 309 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
8129170 8129170 PRJNA495391_S_NODE_27487_length_230_cov_2.174359_g26435_i0 PRJNA495391 27487 230 2.174359 5.0010257 Trebouxia sp. SL0000003 3350044 Plants Plants 204 5.36e-48   NTclustered gi|2917929625|emb|OZ234913.1| 3350044 g26435 i0 85.646 0.908695652173913 209 13 89 12 26 229 760361 760165 Trebouxia sp. SL0000003 genome assembly, chromosome: 8 blastn 209 204 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
8129207 8129207 PRJNA495391_S_NODE_29047_length_224_cov_2.476190_g27995_i0 PRJNA495391 29047 224 2.47619 5.5466656 Trebouxia sp. SL0000003 3350044 Plants Plants 152 1.91e-32   NTclustered gi|2917929625|emb|OZ234913.1| 3350044 g27995 i0 96.703 0.732142857142857 91 3 73 0 1 91 2434569 2434479 Trebouxia sp. SL0000003 genome assembly, chromosome: 8 blastn 164 152 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
8129784 8129784 PRJNA495391_S_NODE_50027_length_175_cov_1.342857_g48975_i0 PRJNA495391 50027 175 1.342857 2.34999975 Trebouxia sp. SL0000003 3350044 Plants Plants 102 1.44e-17   NTclustered gi|2917929695|emb|OZ234922.1| 3350044 g48975 i0 89.873 0.451428571428571 79 8 45 0 1 79 389564 389642 Trebouxia sp. SL0000003 genome assembly, chromosome: 17 blastn 79 102 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
9403724 9403724 PRJNA495391_S_NODE_14148_length_318_cov_2.226148_g13096_i0 PRJNA495391 14148 318 2.226148 7.07915064 Desmochloris halophila 138176 Plants Plants 394 4.3e-105   NTclustered gi|371782123|emb|HE610155.1| 138176 g13096 i0 89.13 44.6918238993711 322 27 100 6 1 318 3084 2767 Desmochloris halophila plastid 16S rRNA gene (partial), 23S rRNA gene (partial) and ITS1, strain UTEX 2073 blastn 14212 394 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
9404080 9404080 PRJNA495391_S_NODE_27028_length_232_cov_1.761421_g25976_i0 PRJNA495391 27028 232 1.761421 4.08649672 Trebouxia sp. SL0000003 3350044 Plants Plants 270 5.26e-68   NTclustered gi|2917929625|emb|OZ234913.1| 3350044 g25976 i0 95.808 1.01724137931034 167 7 100 0 66 232 2434855 2434689 Trebouxia sp. SL0000003 genome assembly, chromosome: 8 blastn 236 270 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
10680850 10680850 PRJNA495391_S_NODE_68809_length_152_cov_1.683761_g67757_i0 PRJNA495391 68809 152 1.683761 2.55931672 Trebouxia sp. SL0000003 3350044 Plants Plants 182 1.52e-41   NTclustered gi|2917929696|emb|OZ234923.1| 3350044 g67757 i0 91.603 0.861842105263158 131 11 86 0 3 133 1124981 1125111 Trebouxia sp. SL0000003 genome assembly, chromosome: 18 blastn 131 182 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
11310446 11310446 PRJNA495391_S_NODE_36709_length_201_cov_3.939759_g35657_i0 PRJNA495391 36709 201 3.939759 7.91891559 Stichococcaceae 2910630 Plants Plants 361 2.5599999999999998e-95   NTclustered gi|1518373087|gb|MK201750.1| 29647 g35657 i0 99.005 100.069651741294 201 2 100 0 1 201 1010 810 Stichococcus sp. strain KZ-5-1-1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 20114 361 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus sp.
11954952 11954952 PRJNA495391_S_NODE_31350_length_217_cov_1.472527_g30298_i0 PRJNA495391 31350 217 1.472527 3.19538359 Trebouxia sp. SL0000003 3350044 Plants Plants 261 2.93e-65   NTclustered gi|2917929627|emb|OZ234915.1| 3350044 g30298 i0 88.479 72.9493087557604 217 23 99 2 2 217 2064812 2064597 Trebouxia sp. SL0000003 genome assembly, chromosome: 10 blastn 15830 261 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
15135500 15135500 PRJNA495391_S_NODE_45052_length_183_cov_2.358108_g44000_i0 PRJNA495391 45052 183 2.358108 4.31533764 Bracteacoccus 50036 Plants Plants 333 4.97e-87   NTclustered gi|6119991|gb|AF183451.1| 50039 g44000 i0 99.454 100 183 1 100 0 1 183 1800 1618 Bracteacoccus giganteus strain UTEX 1251 28S ribosomal RNA gene, partial sequence blastn 18300 333 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Bracteacoccaceae Bracteacoccus Bracteacoccus giganteus
17053181 17053181 PRJNA495391_S_NODE_17454_length_287_cov_1.841270_g16402_i0 PRJNA495391 17454 287 1.84127 5.2844448999999996 Chlamydomonas reinhardtii 3055 Plants Plants 56.5 0.002   NTclustered gi|2082250326|ref|XM_043064087.1| 3055 g16402 i0 92.683 0.452961672473868 41 0 14 2 220 260 1274 1311 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_07g325762v5), mRNA blastn 130 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
17053677 17053677 PRJNA495391_S_NODE_34874_length_206_cov_2.491228_g33822_i0 PRJNA495391 34874 206 2.491228 5.13192968 Coccomyxa subellipsoidea 248742 Plants Plants 156 1.33e-33   NTclustered gi|545365450|ref|XM_005647637.1| 574566 g33822 i0 83.951 2.27184466019417 162 26 79 0 39 200 539 700 Coccomyxa subellipsoidea C-169 hypothetical protein mRNA blastn 468 156 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
19602006 19602006 PRJNA495391_S_NODE_25996_length_236_cov_2.815920_g24944_i0 PRJNA495391 25996 236 2.81592 6.6455712 Trebouxia sp. SL0000003 3350044 Plants Plants 174 4.33e-39   NTclustered gi|2917929622|emb|OZ234910.1| 3350044 g24944 i0 87.919 3.21186440677966 149 16 100 2 1 148 1147628 1147775 Trebouxia sp. SL0000003 genome assembly, chromosome: 5 blastn 758 174 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
20877546 20877546 PRJNA495391_S_NODE_13697_length_323_cov_1.968750_g12645_i0 PRJNA495391 13697 323 1.96875 6.3590625 Trebouxia sp. SL0000003 3350044 Plants Plants 100 1.07e-16   NTclustered gi|2917929624|emb|OZ234912.1| 3350044 g12645 i0 91.667 0.222910216718266 72 6 22 0 221 292 447739 447668 Trebouxia sp. SL0000003 genome assembly, chromosome: 7 blastn 72 100 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
22153789 22153789 PRJNA495391_S_NODE_68858_length_152_cov_1.641026_g67806_i0 PRJNA495391 68858 152 1.641026 2.49435952 Coccomyxa subellipsoidea 248742 Plants Plants 159 7.12e-35   NTclustered gi|545374510|ref|XM_005651479.1| 574566 g67806 i0 90.244 20.1184210526316 123 10 80 2 29 150 110 231 Coccomyxa subellipsoidea C-169 ribosomal protein S23 component of cytosolic 80S ribosome and 40S small subunit mRNA blastn 3058 159 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
23428202 23428202 PRJNA495391_S_NODE_15659_length_302_cov_15.176030_g14607_i0 PRJNA495391 15659 302 15.17603 45.8316106 Trebouxia aggregata 160068 Plants Plants 514 2.98e-141   NTclustered gi|162134340|gb|EU123979.1| 160068 g14607 i0 97.351 118.394039735099 302 8 100 0 1 302 2346 2045 Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast blastn 35755 514 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
23428832 23428832 PRJNA495391_S_NODE_38519_length_197_cov_1.944444_g37467_i0 PRJNA495391 38519 197 1.944444 3.83055468 Trebouxia sp. SL0000003 3350044 Plants Plants 222 1.23e-53   NTclustered gi|2917929625|emb|OZ234913.1| 3350044 g37467 i0 87.5 0.974619289340102 192 24 97 0 1 192 2119313 2119122 Trebouxia sp. SL0000003 genome assembly, chromosome: 8 blastn 192 222 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
24059081 24059081 PRJNA495391_S_NODE_26279_length_235_cov_2.160000_g25227_i0 PRJNA495391 26279 235 2.16 5.076 Trebouxiophyceae 75966 Plants Plants 165 2.59e-36   NTclustered gi|746948124|ref|NC_025531.1| 33092 g25227 i0 94.444 22.7659574468085 108 4 46 2 128 235 145463 145568 Koliella longiseta culture-collection UTEX:339 chloroplast, complete genome blastn 5350 165 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;