RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA495391" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA495391 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10680546 10680546 PRJNA495391_S_NODE_56509_length_165_cov_2.346154_g55457_i0 PRJNA495391 56509 165 2.346154 3.8711541 Neobodo curvifilus 351716 Euglenozoa other_Eukaryota 165 1.6999999999999998e-36   NTclustered gi|197723535|gb|EF681919.2| 351716 g55457 i0 85.366 8.15757575757576 164 19 99 4 1 163 22 181 Neobodo curvifilus strain HFCC37 28S ribosomal RNA gene, partial sequence blastn 1346 165 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo curvifilus
20878219 20878219 PRJNA495391_S_NODE_37217_length_200_cov_2.175758_g36165_i0 PRJNA495391 37217 200 2.175758 4.351516 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 370 4.22e-98   NTclustered gi|1803019516|gb|MT007902.1| 56466 g36165 i0 100 31.545 200 0 100 0 1 200 242 441 Peranema trichophorum isolate PP8 small subunit ribosomal RNA gene, partial sequence blastn 6309 370 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;