RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA495391" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA495391 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6854002 6854002 PRJNA495391_S_NODE_36006_length_203_cov_2.309524_g34954_i0 PRJNA495391 36006 203 2.309524 4.68833372 Gocevia fonbrunei 1078849 Discosea other_Eukaryota 248 2.1e-61   NTclustered gi|345452584|gb|JF694310.1| 1078849 g34954 i0 88.67 93.615763546798 203 23 100 0 1 203 157 359 Gocevia fonbrunei strain ATCC 50196 clone 5 actin gene, partial cds blastn 19004 248 1 Eukaryota Amoebozoa   Discosea   Himatismenida Goceviidae Gocevia Gocevia fonbrunei
18328468 18328468 PRJNA495391_S_NODE_53275_length_170_cov_1.481481_g52223_i0 PRJNA495391 53275 170 1.481481 2.5185177 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 291 2.77e-74   NTclustered gi|659103923|gb|KJ569725.1| 1512276 g52223 i0 98.78 42.9352941176471 164 1 96 1 1 164 403 241 Cochliopodium kieliense clone 9601 18S ribosomal RNA gene, partial sequence blastn 7299 291 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;